Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2089 163 7e-35 seq2210 161 2e-34 seq1994 125 2e-23 >seq2089 Length=24093 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| |||||||||||||| || || ||| Sbjct 11602 CAGATCTTCGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCGGAC 11661 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || |||||||| || ||||| || Sbjct 11662 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAACAG 11721 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||||||||| || ||||||||||| | || ||| |||| || ||| || Sbjct 11722 CGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTTTCCGACTACAACATC 11781 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 11782 CAAAAGGAGTCCACTCTCCA-CTTG 11805 >seq2210 Length=20483 Score = 161 bits (178), Expect = 2e-34 Identities = 154/196 (79%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || |||||||| ||||| || || ||||||||||| ||| || ||||||||||| Sbjct 17566 GTTAAGACTCTCACGGGAAAGACCATTACCCTCGAGGTTGAATCTTCCGACACCATCGAC 17625 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 ||||||||| |||||||| ||||| ||||| |||||||| || || ||||| | ||| Sbjct 17626 AACGTCAAATCGAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAACAACGTTTGATC 17685 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 |||||||| ||||| ||||| ||||| | || || ||||||| ||| |||| || || Sbjct 17686 TTCGCCGGCAAACAACTCGAGGATGGCCGTACACTCTCCGATTACAACATCCAGAAGGAG 17745 Query 178113 TCAACACTGCATCTTG 178128 || || || || |||| Sbjct 17746 TCTACCCTTCA-CTTG 17760 Score = 120 bits (132), Expect = 7e-22 Identities = 141/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || ||||| || ||||| ||| | || ||||| || || |||||| Sbjct 17293 TCACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGCGATACCATTGACAATGTCAAAT 17352 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || ||||| ||||| ||||| || || | || |||||||| | Sbjct 17353 CCAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAACAGCGTTTGATTTTCGCCGGCA 17412 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121 |||| ||||||||||| | || |||| |||||| ||| |||| || || || || || Sbjct 17413 AACAACTCGAAGATGGTCGCAC-CTTGAGCGATTACAACATCCAGAAGGAGTCTACTCTC 17471 Query 178122 CATCTTG 178128 || |||| Sbjct 17472 CA-CTTG 17477 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| | ||||| || || ||| Sbjct 17785 CAAATCTTCGTCAAGACCCTCACTGGGAAGACAATCACTTTGGAGGTTGAGTCATCGGAC 17844 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || || || || || ||||| || || || ||| Sbjct 17845 ACCATCGACAATGTGAAGTCCAAGATCCAAGATAAGGAGGGTATCCCACCTGATCAACAA 17904 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||| | || ||||| | |||||| | ||||| ||| || Sbjct 17905 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTTTCGGATTACAACATC 17964 Query 178104 CAAAAAGAATCAAC 178117 ||||| ||||| || Sbjct 17965 CAAAAGGAATCGAC 17978 >seq1994 Length=27662 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||| ||||| || ||| ||||||||| Sbjct 4069 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 4010 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || ||||| ||||| || || ||||| | Sbjct 4009 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCTCCCGATCAACAACGTTTG 3950 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| ||||| || | || || ||| | ||||| | ||||| ||| ||||||| Sbjct 3949 ATCTTCGCTGGAAAGCAATTGGAGGACGGACGTACTCTCTCAGATTACAACATCCAAAA 3891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203691039013176