Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2089 147 2e-30 seq2210 86.0 6e-12 >seq2089 Length=24093 Score = 147 bits (162), Expect = 2e-30 Identities = 174/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||||||||||| || || ||| |||||| || ||||| ||||| Sbjct 11829 ACCACCACCACGGAGACGTAACACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTC 11770 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| |||||||| | || ||||| ||||| |||||||| |||| ||||||||||| | Sbjct 11769 GGAAAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGG 11710 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 || | | |||||||||| ||| || ||| || | || | ||||| ||| Sbjct 11709 TGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCCGAAGAC 11652 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| | || || ||||| ||||| || ||||| ||||| ||||||||| Sbjct 11651 TCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 11598 >seq2210 Length=20483 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || |||||||| || || | || ||||| || ||||||||||| Sbjct 17745 CTCCTTCTGGATGTTGTAATCGGAGAGTGTACGGCCATCCTCGAGTTGTTTGCCGGCGAA 17686 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| || ||||| || | || | || ||||||| | ||| | || | || ||| Sbjct 17685 GATCAAACGTTGTTGATCGGGAGGGATGCCTTCCTTGT-CTTGAATCTTCGATTTGACGT 17627 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| || || ||||| | || || || || ||||| || ||||| | Sbjct 17626 TGTCGATGGTGTCGGAAGATTCAACCTCGAGGGTAATGGTCTTTCCCGTGAGAGTCTTAA 17567 Query 41850 C 41850 | Sbjct 17566 C 17566 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || ||| | |||||| | || ||||| || ||||||||||| Sbjct 17462 CTCCTTCTGGATGTTGTAATCGCTCAAGGTGCGACCATCTTCGAGTTGTTTGCCGGCGAA 17403 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 |||| ||||||||||| | |||| | |||||||||| ||| || Sbjct 17402 AATCAAACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGGATCTT 17355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288952004800