Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 >seq3 Length=8560927 Score = 123 bits (136), Expect = 3e-23 Identities = 245/354 (69%), Gaps = 8/354 (2%) Strand=Plus/Minus Query 16934 GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCT 16993 ||| | || || ||||||| | || || ||||| || || ||| | ||||| || Sbjct 3180845 GGTTTGTGCTTGAGATGTTGCATCAAGAGGCATGCAAAGTCCGTATGCATACCCTCATCA 3180786 Query 16994 CTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAA 17053 | | |||||| ||||| || || || | ||||||||| || |||| | ||| Sbjct 3180785 CGGGAGATAAGCTCGTTGGAGAAAGTGAGGCCGGGCATCAGGCCCTTGCTCTTGAGCCAG 3180726 Query 17054 AATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAAT 17113 || ||||| || || || ||||| ||||| || || ||||||| |||||| || | ||| Sbjct 3180725 AAGATCGCTGCAAAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCAAAAGCAACTAAC 3180666 Query 17114 CGTTCGGCGTACGTCGCGTCTTTGT-TACGAATCCATTTCTGCACCCACTCGGCTTT-TT 17171 || | ||| | ||| ||||| | | ||| ||||| | |||| || ||||| || Sbjct 3180665 CGCTGGGCAAAGCTCGACTCTTTATCTGCGA-TCCATCGCAAAGCCCAGTCTGCTTTCTT 3180607 Query 17172 GCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA-ATTTCTCTTTTTCCTGTAGG-TC 17229 || ||||| || || || ||||| | ||| | || | |||| | || | || || Sbjct 3180606 GCGA-ATGCATGGGATTGTGTCAATGGCGTCAAAGAGATATGTCTTCT--CTTTGGGATC 3180550 Query 17230 GATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 | | |||||| || ||||| ||||||||||| || || || ||||||||||| Sbjct 3180549 CTTCACATACGTGTCAATGAGAAGGCTGTACATCTCCGAATGGATGTTCTCCAT 3180496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545056577120