Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 seq7 120 3e-22 seq9 105 7e-18 >seq3 Length=8560927 Score = 156 bits (172), Expect = 4e-33 Identities = 342/508 (67%), Gaps = 6/508 (1%) Strand=Plus/Plus Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTACGTGCGCTCTT 116927 ||||||||| | || ||||| ||||| | || ||||| |||||||| ||| | Sbjct 3180496 ATGGAGAACATCCATTCGGAGATGTA--CAGCCTTCTCATTGACACGTATGTGAAGGATC 3180553 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | |||||| | | || ||||||| || || || || ||| | |||| | Sbjct 3180554 CCAAAGAGAAGACATATCTCTTTGACGCCATTGACACAATCCCATGCATTCGCAAGAAAG 3180613 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| |||| |||||||| | | |||| | ||| | | |||| | || | Sbjct 3180614 CAGACTGGGCTTTGCGATGGATCGCAGATAAAGAGTCGAGCTTTGCCCAGCGGTTAGTTG 3180673 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | || || |||||||| ||| ||||||| || || || || || || || ||||||| Sbjct 3180674 CTTTTGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCAGCGATCTTCTGGCTCA 3180733 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||| ||||| ||||||||||| |||||| ||||||||| |||||| | || |||| Sbjct 3180734 AGAGCAAGGGCCTGATGCCCGGCCTCACTTTCTCCAACGAGCTTATCTCCCGTGATGAGG 3180793 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 || ||||| |||||||| || | || | | ||| | ||| ||| | | Sbjct 3180794 GTATGCATACGGACTTTGCATGCCTCTTGATGCAACATCTCAAGCACAAACCCGACCCAA 3180853 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | || | || ||||||| || ||| || || | || |||||||| | Sbjct 3180854 AACTCATCGAAAACATTATCACCGAAGCTGTCAAGATTGAAAAAGAGTTTCTCACCGATG 3180913 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 | || || || || |||| | |||| |||| | |||| |||||||||||||| Sbjct 3180914 CCCTCCCCGTCTCATTGTTGGGCATGAATT-CGAAGCTCATGTGTCAATACATCGAGTTT 3180972 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 ||||||||| | ||||| |||| |||| Sbjct 3180973 GTCGCCGACCGCCTGCTCCTCGCCCTGG 3181000 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || ||||| |||||||| | || ||||| ||| | Sbjct 4895550 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 4895491 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | |||||||||||||| || | ||||| Sbjct 4895490 GACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAAGAGGGCATTCCTCCCGACCA 4895432 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||||||||| || || | || || || | ||||||||| Sbjct 4895431 GCAGCGCCTCATTTTCGCCGGCAAACAGCTCGAGGATGGCCGGACGCTGAGCGACTACAA 4895372 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | |||||||| || || Sbjct 4895371 CATCCAGAAGGAGTCGACGCTGCACCTGGT 4895342 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| || || ||||| |||| || || | || Sbjct 4895322 ATGCAGATCTTCGTGAAAACCTTGACGGGGAAGACGATCACGCTCGAAGTTGAGTCGTCC 4895263 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| || |||||||| ||||||| Sbjct 4895262 GACACGATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCA 4895204 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| |||||||| || |||| || | || || ||| |||||| || Sbjct 4895203 ACAGCGCCTGATCTTTGCGGGCAAGCAATTGGAGGATGGCCGAACTCTCTCCGACTATAA 4895144 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | ||||| || || ||| | | || | |||||| Sbjct 4895143 CATCCAGAAGGAATCGACGCTCCACCTGGTGCTCAGATTACGCGGCGGC 4895095 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | ||||| || || || || | || || || | | Sbjct 4895094 ATGCAGATCTTTGTGAAAACTTTGACGGGAAAGACGATTACGCTGGAGGTGGAGAGCTCG 4895035 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| || ||||| || ||||||| Sbjct 4895034 GACACGATCGACAACG-TCAAGAGCAAGATTCAGGACAAGGAAGGCATTCCGCCGGACCA 4894976 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || ||||| ||| |||| |||| || || || |||||||| Sbjct 4894975 ACAGCGCCTGATCTTTGCCGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCTGACTACAA 4894916 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||| || || | || ||||| ||| | |||||| Sbjct 4894915 CATCCAGAAGGAGAGCACTCTACACTTGGTCTTGCGGTTGCGTGGCGGC 4894867 >seq7 Length=2048283 Score = 120 bits (132), Expect = 3e-22 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||||| ||||| || || ||||||||||| ||||||||| |||| ||||| | |||| Sbjct 21849 AAATAGCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGA 21908 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 || | | | ||||| || || | ||||| || |||||||| | |||||||| Sbjct 21909 CACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCA 21968 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || | |||| ||| ||||| ||||| || |||| || || || | |||||||||||| Sbjct 21969 GCGCTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTGAGCGACTACAACAT 22028 Query 40872 CCAGAAGG 40879 |||||||| Sbjct 22029 CCAGAAGG 22036 >seq9 Length=3042725 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| || |||||||||| || || |||| ||| ||||| || || || Sbjct 1318836 GACAAGGAAGGCATTCCTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAACTTGAA 1318777 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||||||||| ||||||||||| |||| || || || || ||| Sbjct 1318776 GACGGTCGCACCCTCTCCGACTACAATATCCAGAAGGAATCCACTCTCCACCTGGTCTTG 1318717 Query 40903 CGCTTGAGGGGCGGCG 40918 ||| | | || |||| Sbjct 1318716 CGCCTTCGCGGTGGCG 1318701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218659019840