Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq7 104 3e-17 >seq3 Length=8560927 Score = 118 bits (130), Expect = 1e-21 Identities = 174/240 (73%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| || || || | || ||||| ||||| || | ||||||||||| || || |||| Sbjct 4894860 CCTACTGGCCGCCACGCAACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGT 4894919 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | |||| ||| ||||| |||| || | |||||| || || || || || ||||| |||| Sbjct 4894920 AGTCAGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGT 4894979 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTC--- 43123 | | ||| | || ||||||||| ||| | || | |||| ||| | | | |||||| Sbjct 4894980 CCGGCGGAATGCCTTCCTTGTCC-TGAATCTTGCTCTTGA-CGTTGTCGATCGTGTCCGA 4895037 Query 43124 GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | ||| || || || ||||| | || || |||||||| ||||| Sbjct 4895038 GCTC---TCCACCTCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| ||||| | || || ||||| || || ||||| Sbjct 4895359 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGCTGTTTGCCGGCGAA 4895418 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || ||| |||||| ||| || |||| ||| Sbjct 4895419 AATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTGGACTTGA-CGT 4895477 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||||| || || || || | |||||||| ||||| || | || || | Sbjct 4895478 TGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTTTTCA 4895537 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 4895538 CGAAGATCTGCAT 4895550 >seq7 Length=2048283 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || |||||| || |||| || |||||||| || ||||| | Sbjct 22036 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGA 21977 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||| | ||| | || ||||||||| ||| || |||| | Sbjct 21976 TCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 21917 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||||| ||| || || |||| |||||||| |||||||| || ||||| || | Sbjct 21916 CGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 21857 Query 43174 AG 43175 || Sbjct 21856 AG 21855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816999591520