Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq7 107 1e-18 >seq3 Length=8560927 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| || || |||| ||||| ||| || || ||||| ||||||||||| ||| Sbjct 4894868 CCGCCACGCAACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 4894927 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||||||||||||| || || || || ||||| ||||| || Sbjct 4894928 AGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGA 4894987 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | |||| || | || || Sbjct 4894988 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACC 4895047 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || || || || | ||||||||||||||||||||| Sbjct 4895048 TCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||||||| | || || ||||| |||||||||||| | Sbjct 4895324 CCACCGCGGAGACGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 4895383 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | ||| ||||| ||||||||||| |||||||||||| || Sbjct 4895384 AGCGTCCGGCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGA 4895443 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | | | | || | ||| | || ||||| Sbjct 4895444 ATGCCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACC 4895503 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || | |||||||| ||||||||||| Sbjct 4895504 TCAAGAGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| | || ||||||||||| | || ||| ||||| ||||| |||||||| Sbjct 4895096 CCGCCGCGTAATCTGAGCACCAGGTGGAGCGTCGATTCCTTCTGGATGTTATAGTCGGAG 4895155 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || ||| | || ||||| |||||||| || || || || ||||| |||| || |||| Sbjct 4895156 AGAGTTCGGCCATCCTCCAATTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGCGGG 4895215 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | | |||| |||| ||| || || Sbjct 4895216 -ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGGACGACTCAAC 4895274 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || || || || | |||||||| ||||||||||| Sbjct 4895275 TTCGAGCGTGATCGTCTTCCCCGTCAAGGTTTTCACGAAGATCTGCAT 4895322 >seq7 Length=2048283 Score = 107 bits (118), Expect = 1e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||| ||| |||| |||| || | ||||||||| ||||| || Sbjct 22034 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATC 21975 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 | ||||||||||| | |||| | || |||||||| ||||| ||| | || | | Sbjct 21974 AAGCGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTC 21916 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 |||| |||| ||| ||||| || | |||||||| ||||| ||||| || || || || Sbjct 21915 GATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 21856 Query 34381 G 34381 | Sbjct 21855 G 21855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071669255040