Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 387 1e-102 seq3 159 3e-34 seq7 107 2e-18 >seq4 Length=4919768 Score = 387 bits (428), Expect = 1e-102 Identities = 1242/1901 (65%), Gaps = 49/1901 (3%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| || | | | ||||| | ||||| ||||| |||||| Sbjct 3840931 TCTTGATCGACAGTGAACTGGATAGGCTGGGTGGCCGCCATTGTGCGCAGATAGTACATG 3840990 Query 22163 CCCGTCTTCAGACCCATCTTCCA---CGCGTAAAAATGTATCGACGTCAATTTTCCATAA 22219 || ||||| || ||||| ||||| |||| ||||| || || | || || Sbjct 3840991 CCGGTCTTGAGCCCCATTTTCCATCCCGCG---AAATGCATGCTAGTGATCTTGCCCATG 3841047 Query 22220 CTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279 |||| | || || | |||| ||||| ||||||||| || || || || || Sbjct 3841048 GTCGGTTCCTTCAAGTGAATGTTGAGAGACTGGGACTGATCGATGAAGGCACCGCGGTCC 3841107 Query 22280 GCGGCCATATTTATCAATGTACGCATCGAC--ATTTCCCATACGGTCTTGTACAGTTGCC 22337 || ||||| | | | ||| || | | | |||||||| |||||||| || || Sbjct 3841108 GCTGCCATTTGCAGGACTGTCCG--TTGGCTGATTTCCCACACGGTCTTATAGAGAGCTT 3841165 Query 22338 TGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAAT 22397 |||| ||| || || ||| |||||| || ||| | | |||||| || Sbjct 3841166 TGATGTCTGCGGGGATGTTGGGGATGTTCTGGATCGAGCCGCCTTCGGCTATGATTCGAT 3841225 Query 22398 TTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTT 22455 | || || ||||| ||||| || | | | | ||| || | || ||| |||| Sbjct 3841226 TCTTCATATTATCGGACCACAGGCCCAAGTCAACTAGATCCTTCAGCAACCATG--GGTT 3841283 Query 22456 CACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTC 22515 || ||||| || || |||| | ||| ||||| ||| || || || ||| | ||||| Sbjct 3841284 AACGACTTGGAATTCTCCGGCAAGGACACGGCGAGAGTAGATATTTGACGTGTATGGTTC 3841343 Query 22516 GAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAG 22575 |||| |||| ||||| || || ||||||| |||||| || || ||||| || || | || Sbjct 3841344 GAAACATTCGTTGTTGCCTAGAATCTGAGAGGTCGAGGCAGTAGGCATAGGGGCGACAAG 3841403 Query 22576 TAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCTTGAGCA-TCGACCAGTCCCAC 22633 || ||||| | | ||| || || | ||| | || | || | || ||| |||||| Sbjct 3841404 CAGAGAGTTGCGAACGCCATGTTTGGCAATCTCGGCTTTCAAGGAGTC--CCAATCCCAC 3841461 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCG 22691 || || || || || || || |||||| |||||||| | | ||| | || || | Sbjct 3841462 AGGTCCGAGGGAGTGACGTT---CCACATGTCGTATTGAAGAATGCCCTGTGAGACG--G 3841516 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCA 22751 ||||||| ||||| ||||| || | || | | ||| |||||||| || | Sbjct 3841517 GGCTGCCCTCGTATGTTTCATAGGTTCCCTGCTCCTTGGCGAGTTCGCAAGAGGCAGTGA 3841576 Query 22752 ACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTT 22811 || | | || || || || ||||||| | |||| || ||| || | Sbjct 3841577 GAGCAGCATGGTAAATGGTTTCAAAGATTTGAATATTCAGTTGCCTGGCCTCGGGAGAGT 3841636 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | | || | ||||| | ||| || || || | ||| |||||||| | ||||| | Sbjct 3841637 CAAAGGGAAGACGCAGAGCAAGGAAGGCATCGGCGAGACCTTGAACGCCCAGACCGACAG 3841696 Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 | || | | | || | ||||| ||||| | ||||| | || |||||| Sbjct 3841697 GCCGATGTCGGAAGTTGCTCTTCTTTGCTTCGGGAACGGGATAGTAGTTGATATCGATGA 3841756 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 | |||| | ||| | || || | || |||| ||||||| || Sbjct 3841757 TCTTGTTTAGGTTGCGAGTGACCACTTGAGTTACCTCATGAAGACGACCAAAGTCATATT 3841816 Query 22992 CGCC-CGAT--TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048 | || ||| || | || || | || |||| ||||| |||||||| || || | Sbjct 3841817 CACCTCGAGCCTGATCCACGAAGGTAGGGAGAGCGAGGGAGGCCAGATTGCACACAGCGA 3841876 Query 23049 CCTCGTCTTTGGACGTGTAC--TCTACAATTTCGGTACATAGATTGCTACACTTT--ATC 23104 ||||||| ||| |||| || ||||| ||||| || || || | ||| || Sbjct 3841877 CCTCGTCA--GGAGCTGTAAATTCGACAATCTCGGTGCAGAGGTT--TGAGCTTCGGATG 3841932 Query 23105 GTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGC 23164 || ||||| || |||||||||| |||| |||||| | |||||||| |||||||| || Sbjct 3841933 GTACCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTAAAGCATGTAGGGG 3841992 Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGT 23224 || || |||||| ||| | ||||| ||| || ||| | |||| || | ||| ||| Sbjct 3841993 GTCCCAGTCTCGGTCTGTGCCTCGAGGATAGCATACCATAGCTTCTGGGCCTTAAC-CGT 3842051 Query 23225 CGCACGT--ACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT 23282 | || || | ||| |||| ||||| | | ||||| | | || ||| | || | Sbjct 3842052 CTGGCGACCACGTCCCTCCTTC-TCGTATCTCTCGTACAGTTCCTTGAAGTCGTCGCCAT 3842110 Query 23283 AACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTT 23341 | ||| || || || || | | ||| || || | ||| ||||| | || || Sbjct 3842111 AGACGTCAGCTAGACCAGGGGCCT-CATGAGGGCAGAAGAGTGTCCACTCTTGGTTCTTC 3842169 Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| ||| || | || || |||| || || ||||||| ||||| || | Sbjct 3842170 TCGACACGTTCCATGAACAAGTCAGGAGTCCACAGGGCATAGAACAAGTCGCGTGCTCTG 3842229 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 ||||| || |||||| ||||||| || | ||| ||||| || ||||| || ||||| Sbjct 3842230 ACCTCTTCCTTGCCGTGGTTCTTTCGCAGGTTCAAGAAGTCGAAAACGTCTGCGTGCCAT 3842289 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || |||||||| | |||||| || || || | ||| || |||||||| |||||||| || Sbjct 3842290 GGTTCGAGGTAGATGGCAAAGGCACCTGGACGCTTGTTACCGCCCTGGTCGACGTAGCGA 3842349 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || || |||||| | || | ||||| || | |||||| ||||| | ||| || Sbjct 3842350 GCAGTATTGTTGAAGACGCGAAGCATGGGGATGAGACCATTGGAGGTGCCATTGGTCCCT 3842409 Query 23582 GCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641 || | | || ||| | || |||| | || | | || || || |||||| | | Sbjct 3842410 GCAATATAGGATCCTGTGGCACGAATGCAATGGGCATTGAGGCCAATACCTCCGGCAGTC 3842469 Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701 || || ||||| || || || |||||||| |||||||||||||||||||| ||||| Sbjct 3842470 TTGGAAATCATGGCACAAGTCTTGAGAGTGTCATAGATGCCCTCGATGCTGTCTTCTTTC 3842529 Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761 | | | |||||| || || |||| || | || || || |||| |||||| || Sbjct 3842530 ATGTCTATCAAGAAGCAGGAGGACAGCTGAGGTTGAGGTGTTCCGGCATTGAACAGCGTG 3842589 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821 || ||||| || ||| | | ||||| || ||||| || || || || ||| Sbjct 3842590 GGTGAAGCGTGGGTGAAGCACTTCTGGGACATGAGGTTGTAGGTCTCAATAGCCTTTTCA 3842649 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TCT-CG 23878 | ||| || || || ||||| | || || ||||| | ||||| ||| || | ||| || Sbjct 3842650 ACGTCGTCGCCATGAATACCAACTGCCACACGCATGAGCATGTGTTGGGGACGTTCTGCG 3842709 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 | | || || ||| |||| || ||||| | | || ||| || || |||||||| Sbjct 3842710 A-CTTGCTTCC--CAATCTTGAGGAGGTATGATCTCTCCAACGTCTTGAAGCCAAAATAT 3842766 Query 23939 TCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | |||||| ||||| || |||| || || || ||||| || Sbjct 3842767 TGATAGTTGAAGTCTCGGTCGTAGACAATTGCAGAATTGAA 3842807 >seq3 Length=8560927 Score = 159 bits (176), Expect = 3e-34 Identities = 348/511 (68%), Gaps = 24/511 (5%) Strand=Plus/Plus Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | ||||| || ||||| || ||||| || ||||| |||||||| | Sbjct 3180496 ATGGAGAACATCCATTCGGAGATGTACAGCCTTCTCATTGACACGTATGTGAAGGATCCC 3180555 Query 57864 GACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGG 57921 | ||||| || || || || |||| || || ||||| || || |||| ||||| | Sbjct 3180556 AAAGAGAAGACATAT-CTCTTTGACGCCATTGACACAATCCCATGCATTCGC-AAGAAAG 3180613 Query 57922 CAGAGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCT 57976 |||| ||| | | |||||| | |||| | | | || ||| || || | Sbjct 3180614 CAGACTGGGCTTTGCGATGGATCGCAGATAAAGAGTCGAGC-----TTTGCCCAGCGGTT 3180668 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036 | | || || || ||||||||||| || ||||| || || |||||| || || || || Sbjct 3180669 AGTTGCTTTTGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCAGCGATCTTCTG 3180728 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | | |||| ||||||||||||||||| || || ||||||| | || || || || Sbjct 3180729 GCTCAAGAGCAAGGGCCTGATGCCCGGCCTCACTTTCTCCAACGAGCTTATCTCCCGTGA 3180788 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCC---TAATGTACTCTCACATTGTCAATAAACC 58153 |||||| | ||||| || ||||| |||| | ||| | || || || || || Sbjct 3180789 TGAGGGTATGCATACGGACTTTGCATGCCTCTTGATGCAACATCTCA--AGCACAAACCC 3180846 Query 58154 GACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT 58213 ||| | | | |||| ||||||||||||| || ||| ||| ||||| |||||| | Sbjct 3180847 GAC-CCAAAACTCATCGAAAACATTATCACCGAAGCTGTCAAGATTGAAAAAGAGTTTCT 3180905 Query 58214 CACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAA--CAATGATTTGATGTCAAAGTAC 58271 |||||| ||||| || || | || | || ||||| | | | | |||||| ||| Sbjct 3180906 CACCGATGCCCTCCCCGTCTCATTGTTGGGCATGAATTCGAAGCTCATGTGTCAA--TAC 3180963 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 || |||||||| |||||| | || | |||| Sbjct 3180964 ATCGAGTTTGTCGCCGACCGCCTGCTCCTCG 3180994 Score = 120 bits (132), Expect = 3e-22 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || |||| || || |||||||| |||| ||||| |||| Sbjct 4895323 CATGCAGATCTTCGTGAAAACCTTGACGGGGAAGACGATCACGCTCGAAGTTGAGTCGTC 4895264 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| |||| | ||||| ||| || | | ||||||||||||| | ||||| || Sbjct 4895263 CGACACGATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAAGGCATCCCGCCGGA 4895207 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| ||||| || || || || ||||| || ||||| || ||| | ||| || Sbjct 4895206 CCAACAGCGCCTGATCTTTGCGGGCAAGCAATTGGAGGATGGCCGAACTCTCTCCGACTA 4895147 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || |||||||| || || ||||| || ||| | | ||||| Sbjct 4895146 TAACATCCAGAAGGAATCGACGCTCCACCTGGTGCTCAGATTACGCGGCGG 4895096 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || |||| ||||| || ||||| | || || || | Sbjct 4895551 CATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCCAG 4895492 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || |||||| || ||| | || |||||||| Sbjct 4895491 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGCATTCCTCCCGACCA 4895432 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||||||| | || || ||| ||||||| || || Sbjct 4895431 GCAGCGCCTCATTTTCGCCGGCAAACAGCTCGAGGATGGCCGGACGCTGAGCGACTACAA 4895372 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || ||||| || Sbjct 4895371 CATCCAGAAGGAGTCGACGCTGCACCTGGTCCT 4895339 >seq7 Length=2048283 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| |||| || || ||||||||| || Sbjct 21856 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACGATC 21915 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||||||| | ||||| ||||||||||| | Sbjct 21916 GACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCTTG 21975 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| ||| | |||||| ||| ||||||| || ||||| || || Sbjct 21976 ATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTGAGCGACTACAACATCCAGAA 22034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765931945280