Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 149 8e-31 >seq4 Length=4919768 Score = 149 bits (164), Expect = 8e-31 Identities = 349/525 (66%), Gaps = 4/525 (1%) Strand=Plus/Plus Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437 ||||| ||||| | ||| ||||| | | || || || ||||| || ||||| || | | Sbjct 3842284 TGCCATGGTTCGAGGTAGATGGCAAAGGCACCTGGACGCTTGTTACCGCCCTGGTCGACG 3842343 Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497 || | ||| || || || | || | | ||| || || | ||| || || | |||||| Sbjct 3842344 TAGCGAGCAGTATTGTTGAAGACGCGAAGCATGGGGATGAGACCATTGGAGGTGCCATTG 3842403 Query 63498 GTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCC 63555 || || | |||||| ||| |||||||||| | | ||||| | || || || | Sbjct 3842404 GTCCCTGCAATATAGGATCCTGTGGCACGAATGCAATGGGCATTGA--GGCCAATACCTC 3842461 Query 63556 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTAT 63615 | || | || || || | || || || | |||||||||||||| || ||||| | Sbjct 3842462 CGGCAGTCTTGGAAATCATGGCACAAGTCTTGAGAGTGTCATAGATGCCCTCGATGCTGT 3842521 Query 63616 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAA 63675 | || |||||| | | || ||| |||| || | ||| ||||| ||||| | Sbjct 3842522 CTTCTTTCATGTCTATCAAGAAGCAGGAGGACAGCTGAGGTTGAGGTGTTCCGGCATTGA 3842581 Query 63676 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 | | || || |||||||| || || || || | || | || ||||| |||||||||| Sbjct 3842582 ACAGCGTGGGTGAAGCGTGGGTGAAGCACTTCTGGGACATGAGGTTGTAGGTCTCAATAG 3842641 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 | || | || |||||| || ||||| |||||||| | |||||| || || | Sbjct 3842642 CCTTTTCAACGTCGTCGCCATGAATACCAACTGCCACACGCATGAGCATGTGTTGGGGAC 3842701 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 ||| | | || || || || | | ||| ||| | ||||| || || || |||| Sbjct 3842702 GTTCTGCGACTTGCTTCCCAATCTTGAGGAGGTATGATCTCTCCAACGTCTTGAAGCCAA 3842761 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 63900 |||| | || |||||||| ||||| | ||| | ||||||| Sbjct 3842762 AATATTGATAGTTGAAGTCTCGGTCGTAGACAATTGCAGAATTGA 3842806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816938691520