Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 >seq3 Length=8560927 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | ||| ||||| || || ||||| || ||||| Sbjct 4895323 GCCACCGCGGAGACGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 4895382 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | || ||||||||||| || || | || || || ||||| |||||||| Sbjct 4895383 CAGCGTCCGGCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGG 4895442 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| || || | | || | |||||| ||| ||| || Sbjct 4895443 AATGCCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCGAC 4895502 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 4895503 CTCAAGAGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 Score = 98.7 bits (108), Expect = 1e-15 Identities = 275/419 (66%), Gaps = 15/419 (4%) Strand=Plus/Plus Query 52535 ACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCG 52594 |||| |||||| | || || | ||||| || | || ||||| ||| |||||||| Sbjct 3180578 ACGCCATTGACACAATCCCATGCATTCGCAAGAAAGCAGACTGGGCTTTGCGATGGATCG 3180637 Query 52595 AAAACGACAAAG---CCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 | || |||| | | |||||| | || | || || ||||| || ||||| Sbjct 3180638 CA---GATAAAGAGTCGAGCTTTGCCCAGCGGTTAGTTGCTTTTGCAGCCGTCGAAGGCA 3180694 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || || || || ||||| || || || | |||| | | |||| | ||||||| Sbjct 3180695 TCTTCTTCTCTGGATCCTTTGCAGCGATCTTCTGGCTCAAGAGCAAGGGCCTGATGCCCG 3180754 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771 ||||||| || ||||||| | || || || || || || ||||| || || ||||| | Sbjct 3180755 GCCTCACTTTCTCCAACGAGCTTATCTCCCGTGATGAGGGTATGCATACGGACTTTGCAT 3180814 Query 52772 GTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGA---CA 52828 | | | | || | | ||| | || | | |||| | | || || Sbjct 3180815 GCCTCT----TGATGCAACATCTCAAGCACAAAC--CCGACCCAAAACTCATCGAAAACA 3180868 Query 52829 TGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCAT 52888 | | | || || ||| | ||||||||||||||| | || || || | ||||| |||| Sbjct 3180869 TTATCACCGAAGCTGTCAAGATTGAAAAAGAGTTTCTCACCGATGCCCTCCCCGTCTCAT 3180928 Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG 52947 ||||||||||||| ||| | ||||| | |||||||||||||| || ||| | ||| Sbjct 3180929 TGTTGGGCATGAATTCGAAGCTCATGTGTCAATACATCGAGTTTGTCGCCGACCGCCTG 3180987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063479132800