Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-22 >seq3 Length=8560927 Score = 120 bits (132), Expect = 2e-22 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | || ||||| || | |||||||||||| || | ||||| || || Sbjct 4894867 GCCGCCACGCAACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGA 4894926 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || |||| ||||| || ||||||||||| |||| |||||||| || | ||| Sbjct 4894927 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGG 4894986 Query 43002 CACACCTTCTTTTTCGCTG-ATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTC 43058 | ||||| || || ||| ||| ||| ||||| || | | ||||| | ||| ||| Sbjct 4894987 AATGCCTTCCTTGTC-CTGAATCTTGCTC-TTGACGTTGTCGATCGTGTC-CGAGCTCTC 4895043 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | ||| || || ||||| || | |||||||||||| || ||||| Sbjct 4895044 CACCTCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369209572872