Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-29 >seq3 Length=8560927 Score = 145 bits (160), Expect = 1e-29 Identities = 348/519 (67%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303 |||||| ||||||| |||||| | || ||||| |||||| || ||||||| ||| Sbjct 3180484 TTCCAAGTCATGATGGAGAACATCCATTCGGAGATGTACAGCCTTCTCATTGACACGTAT 3180543 Query 125304 ATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTAT 125362 | ||||| ||| | || |||| |||||| |||| || ||||| | || | || Sbjct 3180544 GTGAAGGATCC-CAAAGAGAAGACATATCTCTTTGACGCCATTGACACAATCCCATGCAT 3180602 Query 125363 ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGA 125422 || || || || | |||| | || ||||||| || | |||| | ||| | Sbjct 3180603 TCGCAAGAAAGCAGACTGGGCTTTGCGATGGATCGCAGATAAAGAGTCGAGCTTTGCCCA 3180662 Query 125423 CAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCAT 125482 | | || || || || ||||| || ||||||||||| || || ||||| || || Sbjct 3180663 GCGGTTAGTTGCTTTTGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCAGCGAT 3180722 Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||| |||||||||| || || |||||||| || || | |||||| |||| || Sbjct 3180723 CTTCTGGCTCAAGAGCAAGGGCCTGATGCCCGGCCTCACTTTCTCCAACGAGCTTATCTC 3180782 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCC 125602 || || ||||| | || ||||||| ||| | || | ||||| |||| Sbjct 3180783 CCGTGATGAGGGTATGCATACGGACTTTG-CATGCCTCT-TGATGCAAC-ATCT------ 3180833 Query 125603 CGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGAT 125659 | || || | | ||| ||| ||||| |||||| | ||||| || || | ||| Sbjct 3180834 CAAGCACAAACC---CGACCCAAAACTCATCGAAAACATTATCACCGAAGCTGTCAAGAT 3180890 Query 125660 AGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCT 125719 ||| |||||||||| ||||| |||| || ||| || | |||||||| | ||||| Sbjct 3180891 TGAAAAAGAGTTTCTCACCGATGCCCTCCCCGTCTCATTGTTGGGCATGAATTCGAAGCT 3180950 Query 125720 AATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||||| | ||||| |||||||| || || || || || Sbjct 3180951 CATGTGTCAATACATCGAGTTTGTCGCCGACCGCCTGCT 3180989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058421887840