Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 109 1e-18 >seq3 Length=8560927 Score = 109 bits (120), Expect = 1e-18 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || |||||||| || || | |||||||| | || || || ||||| Sbjct 4894904 TCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAG 4894963 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATT 104487 || || | |||||| || || || || ||||| || ||||||||| ||||| || || || Sbjct 4894964 ATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCCTTGTCCTGAATC-TTGCTCTTGACGTT 4895022 Query 104488 TTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTA 104546 || | || || | || | || ||||| || ||||| ||||| || || | ||||| | Sbjct 4895023 GTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCA 4895081 Query 104547 CAAATATCTGCAT 104559 |||| |||||||| Sbjct 4895082 CAAAGATCTGCAT 4895094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 269133 GGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCT 269192 |||||||||||||||| || || ||||| || ||||| || || || ||||| || |||| Sbjct 3180665 GGTTAGTTGCTTTTGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCAGCGATCT 3180724 Query 269193 TTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 | ||| | |||| | ||||| ||||| || | |||||||| ||||| Sbjct 3180725 TCTGGCTCAAGAGCAAGGGCCTGATGCCCGGCCTCACTTTCTCCAACGA 3180773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397160807472