Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 109 6e-19 seq7 98.7 1e-15 >seq3 Length=8560927 Score = 109 bits (120), Expect = 6e-19 Identities = 162/223 (73%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || ||||| ||||| || | ||||||||||| || || ||||| |||| ||| ||||| Sbjct 4894877 AACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGG 4894936 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || | |||||| || || || || || ||||| ||||| | || | || ||| Sbjct 4894937 CCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCC 4894996 Query 42111 TTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGA 42165 |||||| ||| | || | |||| ||| | | | |||||| |||| ||||| || | Sbjct 4894997 TTGTCC-TGAATCTTGCTCTTGA-CGTTGTCGATCGTGTCCGAGCTC---TCCACCTCCA 4895051 Query 42166 CCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || ||||| | || || |||||||| ||||| Sbjct 4895052 GCGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| ||||| | || || ||||| || || ||||| Sbjct 4895359 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGCTGTTTGCCGGCGAA 4895418 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || ||| |||||| ||| || |||| ||| Sbjct 4895419 AATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTGGACTTGA-CGT 4895477 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||||| || || || || | |||||||| ||||| || | || || | Sbjct 4895478 TGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTTTTCA 4895537 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 4895538 CGAAGATCTGCAT 4895550 >seq7 Length=2048283 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || |||||| || |||| || |||||||| || ||||| | Sbjct 22036 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGA 21977 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | ||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 21976 TCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 21917 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||||| ||| || || |||| |||||||| |||||||| || ||||| || | Sbjct 21916 CGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 21857 Query 42199 AG 42200 || Sbjct 21856 AG 21855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212229626560