Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 seq4 95.1 1e-14 seq9 91.5 1e-13 >seq3 Length=8560927 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || || |||||||| || | || || | || Sbjct 4895339 AGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGGCCATCC 4895398 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| |||||||| ||||||| |||||||||||||||||||| || ||||| || Sbjct 4895399 TCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCC 4895458 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | || || || || | ||| | |||| Sbjct 4895459 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTC 4895518 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| ||||| ||||| || ||||| Sbjct 4895519 TTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/332 (67%), Gaps = 15/332 (5%) Strand=Plus/Minus Query 132651 AGCAACCGATCCGCCACAAACTCGATATATTCGCACATGGCGCGCGAATTCATACCCAAC 132710 |||| || || || ||||||||||| |||| |||||| ||||||||| |||||| Sbjct 3180989 AGCAGGCGGTCGGCGACAAACTCGATGTATTGACACATGAGCTTCGAATTCATGCCCAAC 3180930 Query 132711 AAATCGCAAGGAAGCGCGCTAGTGAAAAACTCTTTTTCAATGTTCACTGCTTCCACGAAC 132770 || | || || || |||| ||||||||||||||| || || ||||| || Sbjct 3180929 AATGAGACGGGGAGGGCATCGGTGAGAAACTCTTTTTCAATCTTGACAGCTTCGGTGATA 3180870 Query 132771 ATGTCCAGTATTTCGGCGGATGACATTTTG-TCGCGCTCATCAAT-ATATTCATTGTAAT 132828 |||| ||||| |||| ||| | ||| | | | | | || ||| | Sbjct 3180869 ATGT------TTTCG----ATGAGTTTTGGGTCGGGTTTGTGCTTGAGATG--TTGCATC 3180822 Query 132829 ACAAA-CACGCAAAGTTTGTATGCAAACCTTCGTCTCTTGATATAAGCTCGTTGCTGAAC 132887 | | || ||||||| ||||||| ||| || || | || |||||||||||| ||| Sbjct 3180821 AAGAGGCATGCAAAGTCCGTATGCATACCCTCATCACGGGAGATAAGCTCGTTGGAGAAA 3180762 Query 132888 GTGAGGCCGGGCATGATGCCTTTTGTTTTAATAAAAAATATTGCCGCAAAACTGCCCGAA 132947 |||||||||||||| | ||| || | || | | || || || ||||| || || Sbjct 3180761 GTGAGGCCGGGCATCAGGCCCTTGCTCTTGAGCCAGAAGATCGCTGCAAAGGATCCAGAG 3180702 Query 132948 AAGAACACGCCTTCTACAATTGCAAAAGCCAC 132979 ||||| | |||||| || ||||||||| || Sbjct 3180701 AAGAAGATGCCTTCGACGGCTGCAAAAGCAAC 3180670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | | || || ||||||| | ||||||||||||| | Sbjct 4894904 TCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAG 4894963 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||| ||||| || ||||| ||||| || || || || || ||| || Sbjct 4894964 ATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCCTTGTCCTGAATCTTGCTCTTGACGTTG 4895023 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | ||||| || | || | ||||| || ||||||||||| || Sbjct 4895024 TCGATCGTGTCCGAGCTCTCCACCTCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCACA 4895083 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 4895084 AAGATCTGCAT 4895094 >seq4 Length=4919768 Score = 95.1 bits (104), Expect = 1e-14 Identities = 284/431 (66%), Gaps = 18/431 (4%) Strand=Plus/Plus Query 153813 GACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTTTTTACT- 153871 |||||| |||||||||||| || ||||| || || ||||| | || | | | | Sbjct 3841075 GACTGGGACTGATCGATGAAGGCACCGCGGTCCGCTGCCATTTG---CAGGACTGTCCGT 3841131 Query 153872 --GCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCAATT 153929 ||| ||||||||||| || || |||| ||||| ||||| |||| ||| || Sbjct 3841132 TGGCTGATTTCCCACACGGTCTTATAGAGAGCTTTGATGTCTGCGGGGATGTTGGGGATG 3841191 Query 153930 TTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAAATTT 153989 ||||| | ||| || | ||||| || ||| ||| | ||| ||| Sbjct 3841192 TTCTGGATCGAGCCGCCTTCGGCTATGATTCGATTCTTCATATTATCGGACCACAGGCCC 3841251 Query 153990 A-GTCGACATAAATCTT----CAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCA 154044 | ||| || || ||| | |||||| | |||||| ||||| || || ||||| | Sbjct 3841252 AAGTCAAC-TAGATCCTTCAGCAACCATG----GGTTAACGACTTGGAATTCTCCGGCAA 3841306 Query 154045 ATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATA 154104 || ||||| || | ||| ||| | || ||||| ||||||||||||||| | Sbjct 3841307 GGACACGGCGAGAGTAGATATTTGACGTGTATGGTTCGAAACATTCGTTGTTGCCTAGAA 3841366 Query 154105 TTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTT 154164 | |||| || | || || |||||| || || | || |||||| || | || |||| Sbjct 3841367 TCTGAGAGGTCGAGGCAGTAGGCATAGGGGCGACAAGCAGAGAGTTGCGAACGCCATGTT 3841426 Query 154165 TTGCAATGCGCAATTTTAAATCTG-CCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 | ||||| | | ||| || | |||||| ||||| || | || ||||||||| Sbjct 3841427 TGGCAAT-CTCGGCTTTCAAGGAGTCCCAATCCCACAGGTCCGAGGGAGTGACGTTCCAC 3841485 Query 154224 ATGTCGTATTG 154234 ||||||||||| Sbjct 3841486 ATGTCGTATTG 3841496 >seq9 Length=3042725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || || ||||| || | || |||||| |||||||||| |||||||| Sbjct 1318733 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCGTCTTCAAGTTGCTTGCCA 1318792 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || ||||||||||| |||||||| ||||| || ||| Sbjct 1318793 GCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCT 1318837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644275372960