Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 122 8e-23 seq3 116 3e-21 seq9 82.4 7e-11 >seq4 Length=4919768 Score = 122 bits (134), Expect = 8e-23 Identities = 587/922 (64%), Gaps = 21/922 (2%) Strand=Plus/Minus Query 122845 AATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAGGTCG 122904 |||||||||| | ||| ||||| || | ||| | || || | | | | |||| Sbjct 3842767 AATATTTTGGCTTCAAGACGTTGGAGAGATCATACCTCCTCAAGATTGGGAAGCAAGTCG 3842708 Query 122905 CCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCG 122964 | |||||| ||||| ||||||||||| || || | || | || || |||| | | Sbjct 3842707 CAGAACGTCCCCAACACATGCTCATGCGTGTGGCAGTTGGTATTCATGGCGACGACGTTG 3842648 Query 122965 AAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCA 123024 |||| || | || || ||| | | ||||| || || | ||||| ||||| |||| Sbjct 3842647 AAAAGGCTATTGAGACCTACAACCTCATGTCCCAGAAGTGCTTCACCCACGCTTCACCCA 3842588 Query 123025 CTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGC 123084 | ||||| ||||| || |||||| |||| || || || ||| | | || Sbjct 3842587 CGCTGTTCAATGCCGGAACACCTCAACCTCAGCTGTCCTCCTGCTTCTTGATAGACATGA 3842528 Query 123085 GCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGATTTCCAAA 123143 |||||||||||| || |||||||| ||| | | || ||| || |||||||||| Sbjct 3842527 AAGAAGACAGCATCGAGGGCATCTATGACACTCT-CAAGACTTGTGCCATGATTTCCAAG 3842469 Query 123144 TTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGA 123203 || ||| || || ||| | || | || | | | | | ||| | || | Sbjct 3842468 ACTGCCGGAGGTATTGGCCTCAATGCCCATTGCATTCGTGCCACAGGATCCTATATTGCA 3842409 Query 123204 AGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTG 123263 | ||| | || | | || || ||| ||||||| || || | ||| || | | Sbjct 3842408 GGGACCAATGGCACCTCCAATGGTCTCATCCCCATGCTTCGCGTCTTCAACAATACTGCT 3842349 Query 123264 CGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCG 123320 || |||||||||||||||| ||| || ||| || | || ||||| || ||||| Sbjct 3842348 CGCTACGTCGACCAGGGCGGTAACAAGCGTCCAGGTGCCTTTGCCATCTACCTCGAACCA 3842289 Query 123321 TGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAG 123380 ||||||| || || | ||| || || || | | ||| || |||||| Sbjct 3842288 TGGCACGCAGACGTTTTCGACTTCTTGAACCTGCGAAAGAACCACGGCAAGGAAGAGGTC 3842229 Query 123381 AAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGT--AA 123438 | ||| ||||| ||||| || || | ||| || || ||||| ||| ||| || | Sbjct 3842228 AGAGCACGCGACTTGTTCTATGCCCTGTGGACTCCTGACTTGTTCATGGAACGTGTCGAG 3842169 Query 123439 AAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGC-GACGTT 123497 |||| || | |||| | ||| | || || || | | ||| | | ||| ||||| Sbjct 3842168 AAGA--ACCAAGAGTGGACACTCTTCTGCCCTCAT-GAGGCCCCTGGTCTAGCTGACGTC 3842112 Query 123498 TACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGT 123557 || ||| | | || | || |||||| | ||||||| || || || | | | Sbjct 3842111 TATGGCGACGACTTCAAGGAACTGTACGAGAGATACGAGAAGGAGGG---ACGTGGTCGC 3842055 Query 123558 CA---GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGA 123614 || |||| ||| | | | | | ||| |||| |||| ||| || || Sbjct 3842054 CAGACGGTTAAGGCCCAGAAGCTATGGTATGCTATCCTCGAGGCACAGACCGAGACTGGG 3841995 Query 123615 ACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGA 123674 || || |||||||| ||||| ||||||||||| || || | ||| |||| |||||||| Sbjct 3841994 ACCCCCTACATGCTTTACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAACTTGGGT 3841935 Query 123675 ACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAA--TACAGCGATGCCGATCAAG 123732 || || | | || || ||| |||| ||| ||||| |||||| | | || | | Sbjct 3841934 ACCATCCGAAGCTCAAACCTCTGCACCGAGATTGTCGAATTTACAGC--TCCTGACGAGG 3841877 Query 123733 TGGCCGTGTGTAATTTGGCTTC 123754 | || ||||| ||| |||| || Sbjct 3841876 TCGCTGTGTGCAATCTGGCCTC 3841855 >seq3 Length=8560927 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| | || | ||| || || ||||| |||||||| ||||| ||||| ||| Sbjct 4895093 ATGCCGCCGCGTAATCTGAGCACCAGGTGGAGCGTCGATTCCTTCTGGATGTTATAGTCG 4895152 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||||||| || || || | |||| || || ||||||||| Sbjct 4895153 GAGAGAGTTCGGCCATCCTCCAATTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGC 4895212 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || |||| || | || | |||||||| ||||| Sbjct 4895213 GGGATGCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCGATCGTGTCGGACGACTC 4895271 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | ||| || || || | ||||| || || || ||||| Sbjct 4895272 AACTTCGAGCGTGATCGTCTTCCCCGTCAAGGTTTTCACGAAGATCTGCAT 4895322 >seq9 Length=3042725 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | ||| || || || || || |||||||| |||||||| || ||| | Sbjct 1318703 CCACCGCGAAGGCGCAAGACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 1318762 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || | ||| || || ||| | |||| || ||||||||||| ||| Sbjct 1318763 AGGGTGCGACCGTCTTCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 1318822 Query 45234 ATGCCTTCTTTATCT 45248 |||||||| || ||| Sbjct 1318823 ATGCCTTCCTTGTCT 1318837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002725396640