Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq7 134 2e-26 seq9 98.7 1e-15 >seq3 Length=8560927 Score = 141 bits (156), Expect = 1e-28 Identities = 167/222 (75%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || ||||| |||| || | || |||||||| ||||| |||||||| || || || || Sbjct 4894877 AACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGG 4894936 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || | |||||||||||| || |||| |||||| ||||| | ||| | || ||| Sbjct 4894937 CCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCC 4894996 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCAC 46551 |||||| ||||| |||||| ||| | | | |||||| |||| ||||| |||| Sbjct 4894997 TTGTCCTGAATCTTGCTCTTGA-CGTTGTCGATCGTGTCCGAGCTC---TCCACCTCCAG 4895052 Query 46552 CGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || ||||||| ||||| |||||||| ||||| Sbjct 4895053 CGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||| ||||| ||||||||| || || || | || ||| Sbjct 4895342 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGGCCATCCTCG 4895401 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| ||||||||||| || | |||||||||||||| || | || ||| |||||| | Sbjct 4895402 AGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 4895461 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||||| || || || || | |||||||| || Sbjct 4895462 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTT 4895520 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| ||||| || ||||| ||||| Sbjct 4895521 GCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 >seq7 Length=2048283 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| ||||| || |||| || ||||||||||||||||| | Sbjct 22036 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGA 21977 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||| | ||| | || ||||||||| |||||| ||||| | Sbjct 21976 TCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 21917 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| ||| || || || | |||||||| |||||||| || || || || | Sbjct 21916 CGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 21857 Query 46584 AG 46585 || Sbjct 21856 AG 21855 >seq9 Length=3042725 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| ||||| || | || ||||| ||||||||||||||||| || ||||| || Sbjct 1318715 CGCAAGACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCG 1318774 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || |||||||| ||||| |||| |||||||||||| | || | || |||||| Sbjct 1318775 TCTTCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCTTCCTTG 1318834 Query 46499 TC 46500 || Sbjct 1318835 TC 1318836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237806499680