Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 159 8e-34 seq9 105 1e-17 >seq3 Length=8560927 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| |||||| ||| || || || ||||| || | || || | || || Sbjct 4894882 CAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCGTC 4894941 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | |||||| || || ||||| || || |||||||| || ||||||||||| ||||| Sbjct 4894942 TTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCCTTGTC 4895001 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||||||| || || |||||||| || ||||| || || |||| ||| Sbjct 4895002 CTGAATCTTGCTCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTAATCGT 4895061 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| ||||||||||| || || | ||||| Sbjct 4895062 CTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Score = 132 bits (146), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| || || | ||||| ||| Sbjct 4895342 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGGCCATCCTCG 4895401 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || || || || ||||| ||||||||||| |||||||| || Sbjct 4895402 AGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 4895461 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||||||||| || ||||||| | | || || || ||||| || | |||| Sbjct 4895462 ATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGAC--TCGACCTCAAGAGTGATGGTCT 4895519 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| ||||| ||||| | ||||| Sbjct 4895520 TGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 >seq9 Length=3042725 Score = 105 bits (116), Expect = 1e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || ||||| |||||||| || || || |||||||| |||| || || | || || Sbjct 1318717 CAAGACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCGTC 1318776 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || ||||| || |||||||| || || || ||||| |||||||||||||| ||||| Sbjct 1318777 TTCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTC 1318836 Query 195048 T 195048 | Sbjct 1318837 T 1318837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480405920428