Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-16 seq6 89.7 4e-12 >seq3 Length=8560927 Score = 102 bits (112), Expect = 7e-16 Identities = 449/702 (64%), Gaps = 9/702 (1%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||| | |||||||| | ||||| ||||| | ||||| || | || || ||| | Sbjct 1082438 GCTTTGCGTCGTCTTCGGACTGCCTGCGAGCGTGCCAAGCGCACCCTGTCCTCTTCGGCA 1082379 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| | |||||| | || || | | ||||| || || | | || | || | Sbjct 1082378 CAGACCTCCATTGAAATCGACTCCCTCTACGAGGGCATCGACTTCTACACCTCCATCACT 1082319 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || ||| ||||| |||| |||||||| || || || ||||| || || Sbjct 1082318 CGTGCTCGATTCGAAGAGCTTTGCCAGGATCTCTTCCGATCCACTATGGAACCTGTCGAG 1082259 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | | ||||| ||||| || || ||| || || || || || | || ||| Sbjct 1082258 CGTGTCCTTCGCGATTCCAAGATCGACAAGTCCTCCGTTCACGAGATCGTCTTGGTCGGT 1082199 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAA 552192 || || || | ||||| | || | ||| ||| ||| |||||| || || Sbjct 1082198 GGTTCCACCCGTATTCCCAGGATCCA-GAAGCTTGTCTCCGACTT-TTTCAACGGCAAGG 1082141 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 || || || | || || || ||||| || ||||||||||| || |||| || | Sbjct 1082140 AACCCAACAAATCAATCAACCCTGACGAGGCCGTCGCCTATGGTGCTGCCGTTCAGGCCG 1082081 Query 552253 CTATTCTTTCTGGACAAACTGA-TGAAAAACTACAAA--ATATTGTACTTGTAGATGTTA 552309 | || | || || | || | ||| | || || | ||| | || | |||||| Sbjct 1082080 CCATCTTGTCCGGTGACACCACCTCCAAATCAACCAACGAGATTTTGCTCTTGGATGTTG 1082021 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 |||| | || || ||| | || || | ||| ||| | |||||| ||| ||| | | | Sbjct 1082020 CTCCGTTGTCCCTCGGTATCGAGACCGCTGGCGGTGTCATGACTCCTCTCATCAAGCGTA 1081961 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTT-TCTACGTATTCAGATAATCAAACT 552428 | || || || || || || || || | || ||||| | || || || || | Sbjct 1081960 ACACCACCATCCCCACCAAGAAGTC-CGAGACCTTCTCTACATTCTCCGACAACCAGCCG 1081902 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | ||| |||||| | | |||||| || | ||| || || || || | || Sbjct 1081901 GGTGTGCTCATTCAAGTCTATGAAGGTGAGCGTGCTCGCACCAAGGACAACAACCTGCTC 1081842 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548 || | || | | |||||||||||||| |||||||| || || || ||||| ||| Sbjct 1081841 GGCAAGTTCGAGCTGTCCGGTATTCCTCCTGCGCCTCGTGGTGTTCCTCAGATTGAGGTT 1081782 Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || |||||||| ||||||||||| || ||||||| ||||| Sbjct 1081781 ACATTCGATATGGATGCCAATGGTATCATGAATGTCTCTGCT 1081740 >seq6 Length=1908156 Score = 89.7 bits (98), Expect = 4e-12 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 550380 TTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| |||||| || || | ||||| | || || ||||||||||| |||||| | || Sbjct 1120021 TTGG-CAAGAAAGTCACCCACGCAGTTGTCACCGTCCCAGCATATTTCAATGACGCCCAG 1120079 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 || ||||| || || |||||||| ||||| || | | |||||| ||| || |||| Sbjct 1120080 CGACAAGCCACCAAGGATGCTGGCACAATTGCCGGTTTGACTGTTCTGCGTGTTGTCAAC 1120139 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || |||||||| || || | || || || || ||||| Sbjct 1120140 GAGCCTACTGCCGCAGCTATCGCCTACGGTCTCGATAA 1120177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029291557701160