Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016-
09-07] 84 sequences; 37,087,895 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 7e-16
seq6 89.7 4e-12
>seq3
Length=8560927
Score = 102 bits (112), Expect = 7e-16
Identities = 449/702 (64%), Gaps = 9/702 (1%)
Strand=Plus/Minus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||| | |||||||| | ||||| ||||| | ||||| || | || || ||| |
Sbjct 1082438 GCTTTGCGTCGTCTTCGGACTGCCTGCGAGCGTGCCAAGCGCACCCTGTCCTCTTCGGCA 1082379
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| ||| | |||||| | || || | | ||||| || || | | || | || |
Sbjct 1082378 CAGACCTCCATTGAAATCGACTCCCTCTACGAGGGCATCGACTTCTACACCTCCATCACT 1082319
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| || ||| ||||| |||| |||||||| || || || ||||| || ||
Sbjct 1082318 CGTGCTCGATTCGAAGAGCTTTGCCAGGATCTCTTCCGATCCACTATGGAACCTGTCGAG 1082259
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| || | | ||||| ||||| || || ||| || || || || || | || |||
Sbjct 1082258 CGTGTCCTTCGCGATTCCAAGATCGACAAGTCCTCCGTTCACGAGATCGTCTTGGTCGGT 1082199
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAA 552192
|| || || | ||||| | || | ||| ||| ||| |||||| || ||
Sbjct 1082198 GGTTCCACCCGTATTCCCAGGATCCA-GAAGCTTGTCTCCGACTT-TTTCAACGGCAAGG 1082141
Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252
|| || || | || || || ||||| || ||||||||||| || |||| || |
Sbjct 1082140 AACCCAACAAATCAATCAACCCTGACGAGGCCGTCGCCTATGGTGCTGCCGTTCAGGCCG 1082081
Query 552253 CTATTCTTTCTGGACAAACTGA-TGAAAAACTACAAA--ATATTGTACTTGTAGATGTTA 552309
| || | || || | || | ||| | || || | ||| | || | ||||||
Sbjct 1082080 CCATCTTGTCCGGTGACACCACCTCCAAATCAACCAACGAGATTTTGCTCTTGGATGTTG 1082021
Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369
|||| | || || ||| | || || | ||| ||| | |||||| ||| ||| | | |
Sbjct 1082020 CTCCGTTGTCCCTCGGTATCGAGACCGCTGGCGGTGTCATGACTCCTCTCATCAAGCGTA 1081961
Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTT-TCTACGTATTCAGATAATCAAACT 552428
| || || || || || || || || | || ||||| | || || || || |
Sbjct 1081960 ACACCACCATCCCCACCAAGAAGTC-CGAGACCTTCTCTACATTCTCCGACAACCAGCCG 1081902
Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488
| ||| |||||| | | |||||| || | ||| || || || || | ||
Sbjct 1081901 GGTGTGCTCATTCAAGTCTATGAAGGTGAGCGTGCTCGCACCAAGGACAACAACCTGCTC 1081842
Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548
|| | || | | |||||||||||||| |||||||| || || || ||||| |||
Sbjct 1081841 GGCAAGTTCGAGCTGTCCGGTATTCCTCCTGCGCCTCGTGGTGTTCCTCAGATTGAGGTT 1081782
Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590
|| |||||||| ||||||||||| || ||||||| |||||
Sbjct 1081781 ACATTCGATATGGATGCCAATGGTATCATGAATGTCTCTGCT 1081740
>seq6
Length=1908156
Score = 89.7 bits (98), Expect = 4e-12
Identities = 116/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 550380 TTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438
|||| |||||| || || | ||||| | || || ||||||||||| |||||| | ||
Sbjct 1120021 TTGG-CAAGAAAGTCACCCACGCAGTTGTCACCGTCCCAGCATATTTCAATGACGCCCAG 1120079
Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498
|| ||||| || || |||||||| ||||| || | | |||||| ||| || ||||
Sbjct 1120080 CGACAAGCCACCAAGGATGCTGGCACAATTGCCGGTTTGACTGTTCTGCGTGTTGTCAAC 1120139
Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| |||||||| || || | || || || || |||||
Sbjct 1120140 GAGCCTACTGCCGCAGCTATCGCCTACGGTCTCGATAA 1120177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029291557701160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |