Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 seq3 102 2e-16 >seq4 Length=4919768 Score = 125 bits (138), Expect = 1e-23 Identities = 694/1097 (63%), Gaps = 29/1097 (3%) Strand=Plus/Plus Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465 ||||||| || || ||||| ||||| ||||| |||||||| | || ||| | Sbjct 3841562 CGCAAGAGGCAGTGAGAGCAGCATGGTAAATGGTTTCAAAGATTTGAATATTCAGTTGCC 3841621 Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTA 221525 ||||||||||||| ||||| | |||||| | ||| | ||||| || || || | Sbjct 3841622 TGGCCTCGGGAGAGTCAAAGGGAAGACGCAGAGCAAGGAAGGCATCGGCGAGACCTTGAA 3841681 Query 221526 CTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAA 221585 | || | ||||| |||| |||| |||| ||||| || |||||||| Sbjct 3841682 CGCCCAGACCGACAGGCCGATGTCGGAAGTTGCTCTTCTTTGCTTCGGGAACGGGATAGT 3841741 Query 221586 AGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCT 221645 |||||| ||||| | ||||| ||||| |||||| |||| | ||||| || Sbjct 3841742 AGTTGATATCGATGATCTTGTTTAGGTTGCGAGTGACCACTTGAGTTACCTCATGAAGAC 3841801 Query 221646 TCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGG 221705 || || | | || || | | || ||||| || | || | Sbjct 3841802 ------GACCAAAGTCATATTCACCTCGAGCCTGA------TCCACGAAGGTAGGGAGAG 3841849 Query 221706 CAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTG 221765 | | | |||||| || ||||| || |||||||| ||| | | | ||||| | Sbjct 3841850 CGAGGGAGGCCAGATTGCACACAGCGACCTCGTCAGGAGCTGTAAATTCGACAATCTCGG 3841909 Query 221766 TACAGAGGTTGCTGCACTT--GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGC 221823 | |||||||| || ||| |||||| |||| || || || || ||| | |||| Sbjct 3841910 TGCAGAGGTT--TGAGCTTCGGATGGTACCCAAGTTCTTCTGGTTGCTCTTTCTATTGCA 3841967 Query 221824 AGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTC 221883 ||||||||||| ||||| |||| |||||||| ||| ||| | || || | Sbjct 3841968 GGCGTCCTTGTAAAGCATGTAGGGGGTCCCAGTCTCGGTCTGTGCCTCGAGGATAGCATA 3842027 Query 221884 CCAGAGTTCTCTGGCGCTCA-CCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCG 221941 ||| || | ||||| || | ||||| | ||| | ||||| ||| | || | Sbjct 3842028 CCATAGCT-TCTGGGCCTTAACCGTC-TGGCGACCACGTCCCTCCTTCTCGT-ATCTCTC 3842084 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACAC-CTGGCGGG 222000 ||| || | | || | || || || | || | || || || | | | ||| Sbjct 3842085 GTACAGTTCCTTG--AAGTCGTCGCCATAGACGTCAGCTAGACCAGGGGCCTCATGAGGG 3842142 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 || | || |||| | | ||| | | ||| | | |||||| | ||| || |||| Sbjct 3842143 -CAGAAGAGTGTCCACTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCA 3842201 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 ||| || | || | || | || | ||| ||| ||| ||||| ||| || | ||| Sbjct 3842202 CAGGGCATAGAACAAGTCGC--GTGCTCTGACCTCTTCCTTGCCGTGGTTCTTTCGCAGG 3842259 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 | ||| || || |||| ||| |||||||| || || || |||| ||| | || || || Sbjct 3842260 TTCAAGAAGTCGAAAACGTCTGCGTGCCATGGTTCGAGGTAGATGGCAAAGGCACCTGGA 3842319 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238 |||||||| || ||||| || || | | | |||||||| |||||| | || Sbjct 3842320 CGCTTGTTACCGCCCTGGTCGACGTAGCGAGCAGTATTGTTGAAGACGCGAAGCATGGGG 3842379 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298 | || || ||||| || ||||| || ||| || | || ||| | | | | Sbjct 3842380 ATGAGACCATTGGAGGTGCCATTGGTCCCTGCAATATAGGATCCTGTGGCACGAATGCAA 3842439 Query 222299 CTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 |||| | ||| ||||| ||||| || || |||||||| || ||||||||||| Sbjct 3842440 TGGGCATTGAGGCCAATACCTCCGGCAGTCTTGGAAATCATGGCACAAGTCTTGAGAGTG 3842499 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||||||||| || ||| || || | || | || || || || |||| |||| Sbjct 3842500 TCATAGATGCCCTCGATGCTGTCTTCTTTCATGTCTATCAAGAAGCAGGAGGACAGCTGA 3842559 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | || | | | ||| || ||||||||||| ||||| || ||| | | ||| Sbjct 3842560 GGTTGAGGTGTTCCGGCATTGAACAGCGTGGGTGAAGCGTGGGTGAAGCACTTCTGGGAC 3842619 Query 222479 ATCAGATCGTACGTCTC 222495 || || | ||| ||||| Sbjct 3842620 ATGAGGTTGTAGGTCTC 3842636 >seq3 Length=8560927 Score = 102 bits (112), Expect = 2e-16 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| | ||||| | || || ||||| || || || |||||||| ||| || || ||| Sbjct 3180655 TTTGCCCAGCGGTTAGTTGCTTTTGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTT 3180714 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGA 25988 || || ||||||||||||||| ||||| |||||||| || ||||| |||||||| Sbjct 3180715 GCAGCGATCTTCTGGCTCAAGAGCAAGGGCCTGATGCCCGGCCT-CACTTTCTCCAACGA 3180773 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||| ||| | | || |||||| | || | || ||||| ||||| Sbjct 3180774 GCTTATCTCCCGTGATGAGGGTATGCATACGGACTTTGCATGCCT 3180818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843824712960