Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 129 2e-24 seq17 113 1e-19 >seq4 Length=4919768 Score = 129 bits (142), Expect = 2e-24 Identities = 377/571 (66%), Gaps = 21/571 (4%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTC-GTCGCTGTA--TTCTACAATCTCACAG 155648 || |||||||| || || || ||| ||| | |||||| ||| |||||||| | Sbjct 3841855 GAGGCCAGATTGCACACAGCGACCTC---GTCAGGAGCTGTAAATTCGACAATCTCGGTG 3841911 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 || ||||| || || |||||| || || ||||||||||| || || || || || Sbjct 3841912 CAGAGGTTTGAGCTTCGGATGGTACCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCG 3841971 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768 |||||||| || ||||| ||||| || ||||| ||||||| || || || ||| Sbjct 3841972 TCCTTGTAAAGCATGTAGGGGGTCCCAGTCTCGGTCTGTGCCTCGAGGATAGCATACCAT 3842031 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGC 155828 || | |||| |||| || | | || ||| ||| ||| || ||||| Sbjct 3842032 AGCTTCTGGGCCTTAACCGTCTGGCGACCACGTCCCTCCTTCTCGTATCTCTCGTACAG- 3842090 Query 155829 GTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 ||| | | || || || || ||| || |||||| || || ||||| || | Sbjct 3842091 -TTCCTTGAAGTCGTCGCCATAGACGTCAGCTAGACCAGGGGCCTCATGAGGGCAGAAGA 3842149 Query 155887 GCGACCAAATTT---TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 | | ||| || | || ||| |||| ||||| || | ||| | ||| | | Sbjct 3842150 GTGTCCACTCTTGGTTCTTCTCGA---CACGTTCCATGAACAAGTCAGGAGTCCACAGGG 3842206 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002 ||||||| | ||| | ||| | |||| || || | |||||| ||||| || || | ||| Sbjct 3842207 CATAGAACAAGTCGCGTGC-TCTGACCTCTTCCTTGCCGTGGTTCTTTCGCAGGTTCAAG 3842265 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG 156062 || || || || | || ||| || || || || ||||| ||| | |||| Sbjct 3842266 AAGTCGAAAACGTCTGCGTGCCATGGTTCGAGGTAGATGGCAAAGGCACCTGGACGCTTG 3842325 Query 156063 ---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| || || || |||||||| || |||||||| | ||||| || || | | Sbjct 3842326 TTACCGCCCTGGTCGACGTAGCGAGCAGTATTGTTGAAGACGCGAAGCATGGGGATGAGA 3842385 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 |||||||| ||||||||||| || ||||| Sbjct 3842386 CCATTGGAGGTGCCATTGGTCCCTGCAATAT 3842416 >seq17 Length=207847 Score = 113 bits (124), Expect = 1e-19 Identities = 195/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 || |||| | ||| |||||| ||||| | || || | ||| ||| ||| |||||| Sbjct 139324 TGCACGCGGAAAGGATCAGAAACGTCAAAAAGGCGTTCTTTGAGGAATGAAGAGGCACCG 139383 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 |||| ||||| || || || ||||||||||||||||| |||||||| |||||||| | | Sbjct 139384 TGTGCGATCATGCAGTCGCGTTCCATTTCACCGAAACGGAGACCACCGTCGCGAGCACGA 139443 Query 251551 CCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTA 251610 || ||| | ||||| || || || | | || || | |||| || || Sbjct 139444 CCTTCGACGGGCTGTCGGGTCAGGATTTGGGTTGGTCCTCGAGCGCGGGAGTGGATTTTG 139503 Query 251611 TCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA--TGCTCGAAG 251668 |||| |||||||| | |||||||||||| | | || |||| ||||| || ||| | Sbjct 139504 TCATCGACCATATGTCTTAGACGCTGGTAGTAGGTAGGGCCGAGGAAGACTTGTGCGACG 139563 Query 251669 -GCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCG 251706 || |||| | ||||| | | || ||||| |||||| Sbjct 139564 AGC--TTGCGC-CCAGTATGCCCATTGTACATGACTTCG 139599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816015956308