Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-26 seq4 132 6e-25 seq3 89.7 6e-12 >seq9 Length=3042725 Score = 138 bits (152), Expect = 1e-26 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||| | ||||| || ||||||||||| ||||||||| |||| || ||| | ||| Sbjct 2818180 CTTTTTGAGATCATCCTGGCTGCCAACTACCTTGACATCAAGGCTCTACTTGATGTCGGG 2818239 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 || ||| | || ||||||||||||||||||||||| || || ||||||||||||||||| Sbjct 2818240 TGTAAGACCGTCGCCAACATGATCAAGGGCAAGTCTCCAGAAGAGATCCGCAAGACCTTC 2818299 Query 1592288 AACATC 1592293 || ||| Sbjct 2818300 AATATC 2818305 >seq4 Length=4919768 Score = 132 bits (146), Expect = 6e-25 Identities = 211/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| || || | ||| |||||||| |||||||| | ||| || || Sbjct 3842331 GCCCTGGTCGACGTAGCGAGCAGTATTGTTGAAGACGCGAAGCATGGGGATGAGACCATT 3842390 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||| ||||| || || | |||| || | ||| || | || || | Sbjct 3842391 GGAGGTGCCATTGGTCCCTGCAATATAGGATCCTGTGGCACGAATGCAATGGGCATTGAG 3842450 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| || || ||||| | |||||| || | || || ||||| ||||| |||||||| Sbjct 3842451 GCCAATACCTCCGGCAGTCTTGGAAATCATGGCACAAGTCTTGAGAGTGTCATAGATGCC 3842510 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| ||| | |||||||| | | ||||| || || || || || | || Sbjct 3842511 CTCGATGCTGTCTTCTTTCATGTCTATCAAGAAGCAGGAGGACAGCTGAGGTTGAGGTGT 3842570 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||||| ||||| |||||||| | || |||||| ||| | | |||||| || ||| Sbjct 3842571 TCCGGCATTGAACAGCGTGGGTGAAGCGTGGGTGAAGCACTTCTGGGACATGAGGTTGTA 3842630 Query 1630362 GGT 1630364 ||| Sbjct 3842631 GGT 3842633 Score = 91.5 bits (100), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| || | |||| |||||||| || || || | |||||| || | | ||| ||||| Sbjct 3842181 CATGAACAAGTCAGGAGTCCACAGGGCATAGAACAAGTCGCGTGCTCTGACCTCTTCCTT 3842240 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||||||||||||| |||| | |||||| || ||| |||||||| || || ||||| Sbjct 3842241 GCCGTGGTTCTTTCGCAGGTTCAAGAAGTCGAAAACGTCTGCGTGCCATGGTTCGAGGTA 3842300 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||||||||| || |||||| ||||| Sbjct 3842301 GATGGCAAAGGCACCTGGACGCTTGTTACCGCC 3842333 >seq3 Length=8560927 Score = 89.7 bits (98), Expect = 6e-12 Identities = 193/284 (68%), Gaps = 11/284 (4%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| ||| || || || ||| | |||||| || | |||||||||||| |||| Sbjct 3180802 TATGCATACCCTCATCACGGGAGATAAGCTCGTTGGAGAAAGTGAGGCCGGGCATCAGGC 3180743 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 | |||||||||| ||||| || ||| || || ||||| |||||||| |||||| Sbjct 3180742 CCTTGCTCTTGAGCCAGAAGATCGCTGCA-AAGGATCCAGAGAAGAAGATGCCTTCGACG 3180684 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCAC 869347 || ||||| | | | ||||| ||||||| |||| ||| || | |||||| Sbjct 3180683 GCTGCAAAAGCAACTAACCGCTGGGCAAAG--CTCGA----CTCTTTATCTGCGATCCAT 3180630 Query 869348 TTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG 869407 || |||||||| || || || | | | || | ||||| |||||| |||||| Sbjct 3180629 CGCAAAGCCCAGTCTGCTTTCTTGCGAATGCATGGGATTGTGTCAATGGCGTCAAAGAGA 3180570 Query 869408 TGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | ||| || || ||||| ||||| ||||| || || || Sbjct 3180569 TATGTCTTCTCTTTGGGATCCTTCACATACGTGTCAATGAGAAG 3180526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107132306566628