Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 132 4e-26 seq4 116 3e-21 >seq3 Length=8560927 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| | || || || || || ||||||||||| || | || Sbjct 4895322 ATGCAGATCTTCGTGAAAACCTTGACGGGGAAGACGATCACGCTCGAAGTTGAGTCGTCC 4895263 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || ||| Sbjct 4895262 GACACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAA 4895203 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || || |||||||| ||| | || || |||||| Sbjct 4895202 CAGCGCCTGATCTTTGCGGGCAAGCAATTGGAGGATGGCCGAACTCTCTCCGACTATAAC 4895143 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||||||||| || ||| ||||| | |||| ||||| ||| Sbjct 4895142 ATCCAGAAGGAATCGACGCTCCACCTGGTGCTCAGATTACGCGGCGGC 4895095 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || |||||||| || || || | | Sbjct 4895094 ATGCAGATCTTTGTGAAAACTTTGACGGGAAAGACGATTACGCTGGAGGTGGAGAGCTCG 4895035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || || ||| Sbjct 4895034 GACACGATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAAGGCATTCCGCCGGACCAA 4894975 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||| |||| || | | |||| || || ||| Sbjct 4894974 CAGCGCCTGATCTTTGCCGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCTGACTACAAC 4894915 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || ||||||||||| ||||| ||||| || ||| Sbjct 4894914 ATCCAGAAGGAGAGCACTCTACACTTGGTCTTGCGGTTGCGTGGCGGC 4894867 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| | || || || || || || || || || || || Sbjct 4895553 ACCATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCC 4895494 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| |||||||| || || |||||||| Sbjct 4895493 AGCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGCATTCCTCCCGAC 4895434 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | || || ||||| |||||||| |||||| | | || || || Sbjct 4895433 CAGCAGCGCCTCATTTTCGCCGGCAAACAGCTCGAGGATGGCCGGACGCTGAGCGACTAC 4895374 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| |||| | || | ||||| ||| Sbjct 4895373 AACATCCAGAAGGAGTCGACGCTGCACCTGGTCCTCCGTCTCCGCGGTGGC 4895323 >seq4 Length=4919768 Score = 116 bits (128), Expect = 3e-21 Identities = 736/1152 (64%), Gaps = 54/1152 (5%) Strand=Plus/Plus Query 138879 GAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGC 138938 ||| || ||||| || ||||| ||||||| |||||||| ||||| || | | ||| | | Sbjct 3841659 GAAGGCATCGGCGAGACCTTGAACGCCCAGACCGACAGGCCGATGTCGGA-AGTTG-CTC 3841716 Query 138939 TTTTGCGGCTTCGATA---GGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCAC 138995 || | | ||||| | ||||| ||||| | ||||||||| ||||||| || || Sbjct 3841717 TTCTTTG-CTTCGGGAACGGGATAGTAGTTGATATCGATGATCTTGTTTAGGTTGCGAGT 3841775 Query 138996 GACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGAC 139055 |||||| | ||| | | | || |||| || ||| || ||| Sbjct 3841776 GACCACTTGAGTTACCTCATGAAGACGACCAAAGTCATATTCACC-------TCGAGCCT 3841828 Query 139056 GACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG 139115 || || || || | || | | ||||| | |||||||| || || ||||| || Sbjct 3841829 GA--TCCACGAAGGTAGGGAGAGCGAGGGAGGCCAGATTGCACACAGCGACCTCGTCAGG 3841886 Query 139116 GTCGCTGTA--TTCGACAATTTCGGCACACAAATTACTACACTT--GATCGTACCTAAAT 139171 |||||| ||||||||| |||| || | || | ||| ||| ||||| || | Sbjct 3841887 A--GCTGTAAATTCGACAATCTCGGTGCAGAGGTT--TGAGCTTCGGATGGTACCCAAGT 3841942 Query 139172 TTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTT 139231 | | || ||||| |||| || || || || ||||||||||| || || || ||||| | Sbjct 3841943 TCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTAAAGCATGTAGGGGGTCCCAGTCT 3842002 Query 139232 CCACTTGTGTCTCTATAAT-GAATTTGAACA-AGTCCCTAGCTTGTA----TTTGACGCA 139285 | |||| ||| | || | || | || || || | || | || || Sbjct 3842003 CGGTCTGTGCCTCGAGGATAGCAT---ACCATAGCTTCTGGGCCTTAACCGTCTGGCGAC 3842059 Query 139286 CGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCG 139344 | | || | || |||||| | ||||| ||||| | ||| |||| | || ||| || Sbjct 3842060 C---ACGTCCCTCCTTCTCGTATCTCTCGTACAGTTCCTTGAAGTCGT-CGCCATAGACG 3842115 Query 139345 TCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACG 139404 |||| ||| | | || | ||| || | ||| | ||| | |||| || ||| Sbjct 3842116 TCAGCTAGACCAGGGGCCTCATGAGGGCAGAAGAGTGTCCACTCTTGGTTCTTCTCGACA 3842175 Query 139405 CGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA--T 139462 || |||||||| || ||| |||||| || | | ||| ||||| || ||| | | Sbjct 3842176 CGTTCCATGAACAAGTCAGGAGTCCACAGGGCATAGAACAAGTCGCGTGC--TCTGACCT 3842233 Query 139463 CTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTT 139522 ||||| || ||| | || ||| | ||| || |||||||| ||||||||||||| Sbjct 3842234 CTTCCTTGCCGTGGTTCTTTCGCAGGTTCAAGAAGTCGAAAACGTCTGCGTGCCATGGTT 3842293 Query 139523 CCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAG 139579 | || |||||||| | || ||| || ||| || || || ||||||| || ||| Sbjct 3842294 CGAGGTAGATGGCAAAGGCACCTGGACGCTTGTTACCGCCCTGGTCGACGTAGCGAGCAG 3842353 Query 139580 CATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT-GCTAC-G 139637 ||| ||||| ||||| | ||| || ||||| | | || || ||||| || | Sbjct 3842354 TATTGTTGAAGACGCGAAGCATGGGGATGAGACCATTGGAGGTGCCATTGGTCCCTGCAA 3842413 Query 139638 GATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTT 139697 || ||| | || | || || | | ||| |||||| ||| || || ||| || || Sbjct 3842414 TATAGGA-TCCTGTG-GCACGAATGCAATGGGCATTGAGGCCAATACCTCCGGCAGTCTT 3842471 Query 139698 GGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCA 139756 ||| || | | ||| || | | || || || || || |||||||| || | || Sbjct 3842472 GGAAATCATGGCACAAGTCTTG-AGAGTGTCATAGATGCCCTCGATGCTGTCTTCTTTCA 3842530 Query 139757 TCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAG 139816 | | || ||||| || || || || ||| | || ||||| ||||| || | Sbjct 3842531 TGTCTATCAAGAAGCAGGAGGACAGCTGAGGTTGAGGTGTTCCGGCATTGAACAGCGTGG 3842590 Query 139817 GACTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACA 139875 | ||||| ||||| || || | ||||| | | ||| || || || || | || Sbjct 3842591 GTGAAGCGTGGGTGAAGCACTT-CTGGGACATGAGGTTGTAGGTCTCAATAGCCTTTTCA 3842649 Query 139876 ATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCC 139935 | || || || ||||| || | || ||||| ||||| |||||| ||||| || Sbjct 3842650 ACGTCGTCGCCATGAATACCAACTGCCACACGCATGAGCATGTGTTGGGGACGTTCTGCG 3842709 Query 139936 AC-CGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCT 139994 || || || | || || || || |||| | |||||| ||||||| || Sbjct 3842710 ACTTGCTTCC-CAATCTTGAGGAGGTATGATCTCTCCAACGTCTTGAAGCCAAAATATTG 3842768 Query 139995 ATAGTTGAAATC 140006 ||||||||| || Sbjct 3842769 ATAGTTGAAGTC 3842780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897127607520