Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 129 9e-24 seq4 114 2e-19 seq3 98.7 2e-14 >seq9 Length=3042725 Score = 129 bits (142), Expect = 9e-24 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || |||||| | ||||| || ||||||||||| ||||||||| | || || ||| | ||| Sbjct 2818180 CTTTTTGAGATCATCCTGGCTGCCAACTACCTTGACATCAAGGCTCTACTTGATGTCGGG 2818239 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 || |||||||| |||||| | |||||||||||||| || || || |||||||||||||| Sbjct 2818240 TGTAAGACCGTCGCCAACATGATCAAGGGCAAGTCTCCAGAAGAGATCCGCAAGACCTTC 2818299 Query 2035749 AACATC 2035754 || ||| Sbjct 2818300 AATATC 2818305 Score = 89.7 bits (98), Expect = 8e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||||||||| || ||||| || ||||| ||| |||| ||||| || ||| Sbjct 190190 GTACTTGGTGACGGCCTTCGTGCCCTCAGACACGGCATGCTTGGCAAGTTCACCAGGCAG 190131 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| | |||| ||||||||||| |||| Sbjct 190130 GATCAGTCTGACGGATGTCTGGATCTCTCGGG 190099 >seq4 Length=4919768 Score = 114 bits (126), Expect = 2e-19 Identities = 207/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| || || | ||| |||||||| |||||||| | || || || Sbjct 3842331 GCCCTGGTCGACGTAGCGAGCAGTATTGTTGAAGACGCGAAGCATGGGGATGAGACCATT 3842390 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||| ||||| || || | |||| || | ||| || | || || | Sbjct 3842391 GGAGGTGCCATTGGTCCCTGCAATATAGGATCCTGTGGCACGAATGCAATGGGCATTGAG 3842450 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| || || ||||| | |||||| || | || || | || || || || |||||||| Sbjct 3842451 GCCAATACCTCCGGCAGTCTTGGAAATCATGGCACAAGTCTTGAGAGTGTCATAGATGCC 3842510 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| ||| | |||||||| | || ||||| || || || || | | || Sbjct 3842511 CTCGATGCTGTCTTCTTTCATGTCTATCAAGAAGCAGGAGGACAGCTGAGGTTGAGGTGT 3842570 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||||||||||| |||||||| | || ||| | ||| ||||||||| | ||| Sbjct 3842571 TCCGGCATTGAACAGCGTGGGTGAAGCGTGGGTGAAGCACTTCTGGGACATGAGGTTGTA 3842630 Query 2073837 GGT 2073839 ||| Sbjct 3842631 GGT 3842633 Score = 89.7 bits (98), Expect = 8e-12 Identities = 286/447 (64%), Gaps = 12/447 (3%) Strand=Plus/Plus Query 2071572 AAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGG 2071629 ||| | ||| | ||||||||| ||||| | | ||| |||| |||| ||||| |||| Sbjct 3841893 AAATTCGACAATCTCGGTGCAGAGGTTTGAG--CTTCGGATGGTACCCAAGTTCTTCTGG 3841950 Query 2071630 TTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGC 2071689 ||||| | ||| ||||||||||| ||||||||||| | || |||||| |||| Sbjct 3841951 TTGCTCTTTCTATTGCAGGCGTCCTTGTAAAGCATGTAGGGGGTCCCAGTCTCGGTCTGT 3842010 Query 2071690 GCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCC 2071745 ||| || ||| || |||| | | | || |||| || ||| || || Sbjct 3842011 GCCTCGAGGATAGCATACCATAGCTTCTGGGCCTTAACCGT----CTGGCGACCACGTCC 3842066 Query 2071746 CTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCC 2071805 || | || | | ||| || |||| | | || || || Sbjct 3842067 CTCCTTCTCGTATCTCTCGTACAGTTCCTTGAAGTCGTCGCCATAGACGTCAGCTAGACC 3842126 Query 2071806 GGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAA 2071865 || ||||| ||||| ||||| | ||| || | || | || || ||| || Sbjct 3842127 AGGGGCCTCATGAGGGCAGAAGAGTGTCCACTCTTGGTTCTTCTCGACACGTTCCATGAA 3842186 Query 2071866 CAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTG 2071925 || ||| ||||||||| | || || | ||||| || | | ||| ||||||||||| Sbjct 3842187 CAAGTCAGGAGTCCACAGGGCATAGAACAAGTCGCGTGCTCTGACCTCTTCCTTGCCGTG 3842246 Query 2071926 GTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGC 2071985 ||||||| ||||| | |||||| | ||| |||||||| || || |||||| ||| Sbjct 3842247 GTTCTTTCGCAGGTTCAAGAAGTCGAAAACGTCTGCGTGCCATGGTTCGAGGTAGATGGC 3842306 Query 2071986 AAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||| || |||||| ||||| Sbjct 3842307 AAAGGCACCTGGACGCTTGTTACCGCC 3842333 >seq3 Length=8560927 Score = 98.7 bits (108), Expect = 2e-14 Identities = 185/270 (69%), Gaps = 9/270 (3%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 |||||||||||| ||||| |||||||||| ||||| || || || ||||| Sbjct 3180759 GAGGCCGGGCATCAGGCCCTTGCTCTTGAGCCAGAAGATCGCTGCAAAGGATCCAGAGAA 3180700 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 |||||||| |||||||| ||||| | || | ||||| |||||| || | ||| Sbjct 3180699 GAAGATGCCTTCGACGGCTGCAAAAGCAACTAACCGCTGGGCAAA--GCTCGA----CTC 3180646 Query 794496 TTTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTC 794552 ||| | |||||| || ||||| ||||| || || | | | || | ||||| Sbjct 3180645 TTTATCTGCGATCCATCGCAAAGCCCAGTCTGCTTTCTTGCGAATGCATGGGATTGTGTC 3180586 Query 794553 GATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 |||||| |||||| | |||||| || ||||| || || ||||| ||||| || Sbjct 3180585 AATGGCGTCAAAGAGATATGTCTTCTCTTTGGGATCCTTCACATACGTGTCAATGAGAAG 3180526 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGAT 794642 ||| |||| || |||||||| || || Sbjct 3180525 GCTGTACATCTCCGAATGGATGTTCTCCAT 3180496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916237464536876