Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq4 84.2 2e-11 >seq3 Length=8560927 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | |||| || | ||| || || || || || |||||||||| Sbjct 4895322 TGCCACCGCGGAGACGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 4895381 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | || | || ||||||||||| |||||| ||||||| ||||| || || || | Sbjct 4895382 TCAGCGTCCGGCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAG 4895441 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| || | | | || | ||||| ||| || | Sbjct 4895442 GAATGCCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCGA 4895501 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| |||| |||||||| ||||| ||||| Sbjct 4895502 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || ||||||||||| ||||| |||| || || || || || |||||||| Sbjct 4894867 GCCGCCACGCAACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGA 4894926 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || ||||||| | ||| || ||||| | || || |||||||| |||||||| Sbjct 4894927 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGG 4894986 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| | || | | | || | ||||| | | || || Sbjct 4894987 AATGCCTTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATCGTGTCCGAGCTCTCCAC 4895046 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||||| ||||||||||||||| ||||| Sbjct 4895047 CTCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 >seq4 Length=4919768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 209/317 (66%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTG 131794 || || ||||| |||| ||| || ||||| ||||| | || | || | || ||| Sbjct 3842260 TTCAAGAAGTCGAAAACGTCTGCGTGCCATGGTTCGAGGTAGATGGCAAAGGCACCTGGA 3842319 Query 131795 CGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGC 131851 ||||| |||||| || | || | ||| | | |||||| | ||||| | |||||| Sbjct 3842320 CGCTTGTTACCGCCCTGGTCGACGTAGCGAGCAGTATTGTTGAAGACGCGAAGCATGGGG 3842379 Query 131852 TCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTG 131911 | ||| |||| | | |||||||| | ||| ||| || |||| | || Sbjct 3842380 ATGAGACCATTGGAGGTGCCATTGGTCCCTGCAATATAGGATCCTGTGGCACGAATGCAA 3842439 Query 131912 TGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTG 131971 || | ||||| |||||||||||| | || || || | || || | | |||||| Sbjct 3842440 TGGGCATTGAGGCCAATACCTCCGGCAGTCTTGGAAATCATGGCACAAGTCTTGAGAGTG 3842499 Query 131972 TTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGT 132031 | |||||| || || | |||||| | ||||| | || ||||| ||||||| ||| Sbjct 3842500 TCATAGATGCCCTCGATGCTGTCTTCTTTCATGTCTATCAAGAAGCAGGAGGACAGCTGA 3842559 Query 132032 TGGTGAAATGTGCCGGC 132048 | ||| ||| ||||| Sbjct 3842560 GGTTGAGGTGTTCCGGC 3842576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933964973408