Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 221 4e-52 seq6 187 8e-42 seq17 87.8 5e-12 seq9 84.2 7e-11 >seq3 Length=8560927 Score = 221 bits (244), Expect = 4e-52 Identities = 492/735 (67%), Gaps = 9/735 (1%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||||| || ||||| || || || || | ||| | | | || || Sbjct 1083556 GCAATTGGCATCGATTTGGGCACTACCTACTCATGCGTGGGTGTCTTCCGGGACGACCGC 1083497 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 |||| || || || ||||| || || ||| |||| || || || | |||||| || ||| Sbjct 1083496 ATAGAGATCATCGCCAATGACCAGGGCAACCGAACCACCCCCTCGTTCGTTGCTTTCACC 1083437 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || ||||||||| | ||||||||| | || || || || | || || || | || Sbjct 1083436 GACACTGAGCGTCTCATTGGTGATGCCGCGAAGAACCAGGTCGCCATGAACCCCCACAAC 1083377 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACA---AATCTACACAA 349435 || || || || || |||||||| || ||| | | || ||| || | ||| Sbjct 1083376 ACCGTCTTCGACGCCAAGCGACTGATCGGTCGTAAATTCAGCGACCCCGAAGTT---CAA 1083320 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || | || | | | ||| |||| || || | || Sbjct 1083319 GCCGATATGAAGCACTTCCCATTCAAGGTCAT-CGACAAG--GGTGGCAAGCCGGTCATC 1083263 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||| || | ||||||||| | || || || ||| |||||||| || || ||||| Sbjct 1083262 CAGGTGGAGTTCAAAGGTGAAGAGAAGCAGTTCACACCAGAAGAAATCTCGTCCATGGTC 1083203 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 || || |||| |||| ||| || |||| | |||| ||||| | | || || Sbjct 1083202 TTGACCAAGATGAGAGAAACTGCGGAGTCATACCTCGGTGGCACAGTCAACAACGCAGTC 1083143 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 || || || || |||||||| || || | || || || || || |||||||| Sbjct 1083142 ATCACCGTGCCTGCCTATTTCAACGACTCTCAACGCCAAGCCACCAAGGATGCTGGTCTG 1083083 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | || || || | || || || |||||||||||||| || ||||| || Sbjct 1083082 ATTGCCGGCCTCAACGTCCTTCGTATCATCAACGAACCCACTGCTGCCGCCATTGCCTAC 1083023 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | ||| || ||| | || || || ||| | |||||||| Sbjct 1083022 GGTCTCGACAAGAAGGCTGAAGGCGAGCGCAATGTCCTCATCTTCGATCTCGGTGGTGGC 1082963 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||| ||||| || || | || |||| ||||| || || ||||| || | |||||| Sbjct 1082962 ACTTTCGATGTTTCTCTCTTGACTATTGAGGAGGGTATCTTCGAAGTCAAGTCCACTGCT 1082903 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 || || || ||||| ||||| || || || || || ||||| || || ||||| || Sbjct 1082902 GGCGACACTCATCTGGGTGGTGAGGACTTCGACAACCGTCTTGTCAACCACTTTGTGAAT 1082843 Query 349916 GAATTTAAGCGTCAA 349930 || || || ||| || Sbjct 1082842 GAGTTCAAACGTAAA 1082828 >seq6 Length=1908156 Score = 187 bits (206), Expect = 8e-42 Identities = 737/1136 (65%), Gaps = 45/1136 (4%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| || || | |||||| | | ||| ||||||||| | || || ||||| | Sbjct 1119963 CCTGAAGAGATCTCCGCCATGGTTCTTGGTAAGATGAAGGAAGTCGCGGAGGCATACCTT 1120022 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | ||| || | || ||| | || || ||||| ||||| ||||| |||||||| Sbjct 1120023 GGCAAGAAAGTCACCCACGCAGTTGTCACCGTCCCAGCATATTTCAATGACGCCCAGCGA 1120082 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || |||||||||| ||||| || || | |||||| | | | || || Sbjct 1120083 CAAGCCACCAAGGATGCTGGCACAATTGCCGGTTTGACTGTTCTGCGTGTTGTCAACGAG 1120142 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| ||||| || || || || || ||||| | | | | |||| | | || Sbjct 1120143 CCTACTGCCGCAGCTATCGCCTACGGTCTCGATAAGAAGGG---CAAAGAGAGTCAAATC 1120199 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || ||| ||| | |||||||| ||||||||||| || || || | ||||||| || Sbjct 1120200 ATTGTTTACGATCTTGGTGGTGGGACTTTTGATGTTTCCCTTCTTTCGATTGAAGATGGC 1120259 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || ||| || || |||||||| || ||||||||||| ||||| || || | Sbjct 1120260 GTCTTCGAGGTTTTGGCTACCGCTGGTGACACTCATCTTGGTGGCGAAGACTTCGACCAG 1120319 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA----ATTGATATTGG 349947 || | | ||||||| || |||| || |||| || | ||| || | Sbjct 1120320 CGAGTGATCGACTATTTTGTGAAGAAATTCAA----CAAGGAGAACGATGTCGATGTTCG 1120375 Query 349948 AGATAATC-CTAGAGCAATGCGTCGCCTAAGAACTGCG-TGT-GAACGTGCTAAGCGTTC 350004 | | | | ||| | ||| || || ||| ||| || || || |||||||| | Sbjct 1120376 CAAGGACCTCAAGA-CTATGGGTAAGCT--GAAGCGCGAAGTCGAGCGAGCTAAGCGAAC 1120432 Query 350005 CTTATCATCT--ACTACCCAAACCTC-TATTGAAATTGATTCTCTTGCTGATGGCAAAGA 350061 | || ||| | | | | ||| |||||||| || || | |||| || || Sbjct 1120433 TCTCTCTTCTCAAATGTCGA---CTCGAATTGAAATCGAAGCTTTCCACAATGGAAAGGA 1120489 Query 350062 TTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGC 350121 |||| | | | || || || ||| || ||||| |||||| || || | || Sbjct 1120490 CTTCTCTGAGACCTTGACCCGAGCCAAGTTCGAGGAATTGAATATGGACCTGTTCA-AGA 1120548 Query 350122 A-ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATC--AGAT 350178 | || | | || || ||| |||| || ||||| || || ||| | ||||| |||| Sbjct 1120549 AGACGCTCAAGCCGGTCGAACAAGTTTTGAAAGACGC--CAAGGTCAAGAAATCCGAGAT 1120606 Query 350179 TGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACT-AT 350237 |||||| | || | ||||||||||||| ||||| || || ||| |||| | | || Sbjct 1120607 TGATGACATTGTCCTCATTGGTGGTTCTACCCGTATCCCCAAGGTT---CAGTCAATGAT 1120663 Query 350238 C--TGAGTTTTTTAATGGCAAAGAA--CCTTCTAGATCAATTAATCCAGATGAAGCTGTT 350293 | || || ||| |||| ||||| | | || || || || || ||||||||| Sbjct 1120664 CGAAGAATTCTTTGGTGGC-AAGAAGGCAAGCAAG-GGTATCAACCCGGACGAAGCTGTT 1120721 Query 350294 GCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTGAT 350353 |||||||| || || ||||||| | | | || || ||| | | || Sbjct 1120722 GCATATGGCGCAGCCGTTCAGGGTGGTGTCCTTTCCGG-----CGAG-ACCGGCACCGAA 1120775 Query 350354 GATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTA 350413 || || | || | ||||| | ||| ||| | ||||| | |||||| | |||| ||| Sbjct 1120776 GACCTCATTCTCATGGATGTCAATCCTCTTACTCTTGGCATCGAAACTACCGGTGGAGTC 1120835 Query 350414 ATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCT 350473 ||||| || ||||| |||| | | || || || || || || |||| || | Sbjct 1120836 ATGACCAAGCTCATTCCCCGAAACACTCTCGTCCCGACCAAGAAATCTCAAATCTTCAGT 1120895 Query 350474 ACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGC 350533 || || || || ||||| | ||| |||||||| || ||||| ||||| || Sbjct 1120896 ACGGCAGCCGACAACCAGCCCGTGGTGTTGATTCAAGTTTTCGAAGGCGAACGAGCAATG 1120955 Query 350534 ACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGA 350593 || || || || || || || ||||| || | || ||||| || ||| | Sbjct 1120956 ACAAAGGACAACAACCTCCTAGGCAAATTTGAACTCACTGGTATTCCTCCGGCTCCTCGT 1121015 Query 350594 GGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGT 350649 || || |||||||| ||||| || ||||| | || |||| |||||| | || || Sbjct 1121016 GGTGTCCCTCAGATCGAAGTGTCCTTCGAACTCGACGCAAACGGTATTCTCAAGGT 1121071 >seq17 Length=207847 Score = 87.8 bits (96), Expect = 5e-12 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 378250 GTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCA 378309 || || || |||||||| || | ||| | |||||| |||| || || ||||| || || Sbjct 155132 GTCTTGACAGCAGTATCGATAAGACCCTCGCGACCAGCCATGGCGTGAAAGAAGAACTCT 155073 Query 378310 GTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCA 378369 || || || | |||| | | | || |||||| || ||||| | | || | | Sbjct 155072 GTGGGGGTCAAGCCACGCAGATAGGAGTTCTCAACGAAGCCTCTCGAAGGAGCGGAGTAA 155013 Query 378370 TCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCA 378429 || | |||| |||| || | ||| || | | || ||| | ||||| ||||| || Sbjct 155012 TCGTCCTTTGCGAAATGGGGCAGTGTGCGGTATTTGAAGCCAAAAGGAATACGTTTGCCT 154953 Query 378430 TCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAGCAATATTTAAATCACTACCTTTA 378489 || ||| ||||||||||| || | ||||||||||||||| | | | |||||| Sbjct 154952 TCCACAGCCTGTTGACCAACGATAGCAGTCATTTGAGCAATATTGATAGTAGAACCTTTT 154893 Query 378490 GACCCAGCATTAACCATA 378507 || || ||| | ||||| Sbjct 154892 GAGCCTGCACGAGCCATA 154875 >seq9 Length=3042725 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || || ||||| || || || || ||||| || || || | || || || |||||| Sbjct 1318721 ACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCGTCTTCA 1318780 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 ||||| || ||||| ||||| || || ||||| || |||||||| ||||| || || Sbjct 1318781 AGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTC 1318836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252769207452