Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 210 2e-49 seq11 98.7 1e-15 >seq4 Length=4919768 Score = 210 bits (232), Expect = 2e-49 Identities = 469/699 (67%), Gaps = 4/699 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| || | ||| ||| |||| ||| || ||||| | || || |||||||| Sbjct 3842637 TGAGACCTACAACCTCATGTCCCAGAAGTGCTTCACCCACGCTTCACCCACGCTGTTCAA 3842578 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || ||| |||||| |||| ||||||| || | | ||||| || ||| Sbjct 3842577 TGCCGGAACACCTCAACCTCAGCTGTCCTCCTGCTTCTTGATAGACATGAAAGAAGACAG 3842518 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| |||||||| || || |||||| |||||| || |||||| | || || Sbjct 3842517 CATCGAGGGCATCTATGACACTCTCAAGACTTGTGCCATGATTTCCAAGACTGCCGGAGG 3842458 Query 53422 TATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||| || || | ||| | | | ||||| | || | || ||||| || | Sbjct 3842457 TATTGGCCTCAA-TGCCCATTGCATTCGTGCCACAGGATCCTATATTGCAGGGACCAATG 3842399 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 || | || |||| || | || ||||| |||||||||||||| || || || |||||| Sbjct 3842398 GCACCTCCAATGGTCTCATCCCCATGCTTCGCGTCTTCAACAATACTGCTCGCTACGTCG 3842339 Query 53541 ACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 ||||||| ||| ||||| | ||| | | || |||||||||||||| || |||||||| Sbjct 3842338 ACCAGGGCGGTAACAAGCGTCCAGGTGCCTTT-GCCATCTACCTCGAACCATGGCACGCA 3842280 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 ||| || | || || | | ||||| ||| || || | |||||| | | || Sbjct 3842279 GACGTTTTCGACTTCTTGAACCTGCGAAAGAACCACGGCAAGGAAGAGGTCAGAGCACGC 3842220 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||| |||| || ||||||| ||| ||| | |||||| || || |||||| || | Sbjct 3842219 GACTTGTTCTATGCCCTGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGAACCAA 3842160 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 |||||| || | ||||| | ||| ||| || || | ||||| || || || Sbjct 3842159 GAGTGGACACTCTTCTGCCCTCATGAGGCCCCTGGTCTAGCTGACGTCTATGGCGACGAC 3842100 Query 53780 TTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 || || || |||| || |||| |||| || ||| ||| ||||| Sbjct 3842099 TTCAAGGAACTGTACGAGAGATACGAGAAGGAGGGACGTGGTCGCCAGACGGTTAAGGCC 3842040 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || ||||| |||| |||||| || ||| ||||| || || || |||||| Sbjct 3842039 CAGAAGCTATGGTATGCTATCCTCGAGGCACAGACCGAGACTGGGACCCCCTACATGCTT 3841980 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||| | ||| |||||||||||||||||| Sbjct 3841979 TACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAAC 3841941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || || ||||| | |||||| |||||||||||||| ||||| | || || | || Sbjct 3841109 GCGGACCGCGGTGCCTTCATCGATCAGTCCCAGTCTCTCAACATTCACTTGAAGGAACCG 3841050 Query 55847 TCACTGGCCAAGTTGAGCTCG-ATGCACTTTTACGGG-TGGAAGAAGGGACTCAAGACGG 55904 | ||| |||| | | || | ||||| ||| |||| ||||| | ||| |||||||| | Sbjct 3841049 ACCATGGGCAAGATCA-CTAGCATGCA-TTTCGCGGGATGGAAAATGGGGCTCAAGACCG 3840992 Query 55905 GTATGTACTATCTGCGGAC 55923 | |||||||||||||| || Sbjct 3840991 GCATGTACTATCTGCGCAC 3840973 >seq11 Length=420402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 206/302 (68%), Gaps = 10/302 (3%) Strand=Plus/Plus Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333 ||||| ||| ||| | |||| ||| || || ||||| || |||| ||||||| ||| Sbjct 15757 GAATAGCTTCCTGGCGAAGGGTGATAGACGGGTAAAAATATATCGAGCACTTGCAGAATC 15816 Query 117334 CTTGCCACCAGCAAGA---CGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||| || | | |||||||| || || || || ||||| | ||| | || Sbjct 15817 ---GCCTCCGCCTTGGTTTCGCGTACCAAACTGCCCGGAGGGTTCCAACAAGTTGACATT 15873 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| | || ||||| ||||| || | |||||| || |||||| | || || Sbjct 15874 GTTTGACCCTACAAAATTTTGCGCGAGCCCGACAATTGTCTGTTGGAGAGATGTTTCGCC 15933 Query 117451 ATGGTGATACGCCGTC-TGCTCCGCC-ACGTAGCCCGCCAGCTGAGCCACCTTCATGTCT 117508 ||||||||| || ||| || ||||| || ||||||| |||| ||| || ||||| || Sbjct 15934 ATGGTGATAGGCGGTCATG--CCGCCGACCAAGCCCGCAAGCTCAGCTACTTTCATATCC 15991 Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCA 117568 ||| || ||||| ||| ||| | || || || ||||| | |||||||||||| Sbjct 15992 TTTCTCAAATTACGCTTGAAGCATGCAAACATGACTTTTCGCTGTCCGGGCTTCAGACCA 16051 Query 117569 TC 117570 || Sbjct 16052 TC 16053 Score = 86.0 bits (94), Expect = 7e-12 Identities = 196/291 (67%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 152780 AGCCCTT-GATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAG 152838 ||||||| ||| || ||||||| |||| || ||||||||||| | | | |||||| Sbjct 16538 AGCCCTTTGATATGACTTCCGTCATGATCTTGATCAGTCATGATCATTAAATGGCCGTAG 16597 Query 152839 CGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAG 152897 || || || || ||| | ||| ||||| || |||||||| |||| || |||| Sbjct 16598 CGGAGATCGCG-GGTGTCAGTGTACACCTTCTTGTGCTGAAGCCCAAGGAAGTTCTTGAT 16656 Query 152898 GTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGG 152957 || || ||| |||| | | | ||| | || | ||||| || || || | | Sbjct 16657 ATTCTGAATTTCTGCATTTTTCGAGATCTGGTCAACAGAAGCATCTCGGACGTTAAGGAG 16716 Query 152958 CTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAAT 153017 ||| ||||| | || || || |||||| | | |||| || ||| | || || || Sbjct 16717 CTTGCCCCGTAACGGGAAGACACCGAACAGATCGGGGCCGACGACGGATCGTCCTGCCAT 16776 Query 153018 AGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTG 153068 |||||| ||||||| ||||| || ||||| | || | ||||| | ||| Sbjct 16777 TGCAAGGCCTTTCGCTGAGTCGCCTTCGGTCAAGATCAAGGTACACTTGTG 16827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215425423200