Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 seq19 118 3e-21 seq9 116 9e-21 seq7 111 4e-19 >seq3 Length=8560927 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || |||||||| || ||||| || |||| || || |||| | ||||| || Sbjct 4895107 TCTGAGCACCAGGTGGAGCGTCGATTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCC 4895166 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || | ||||| || || ||||| || || |||||||| ||||| || |||||||| Sbjct 4895167 ATCCTCCAATTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGCGGGATGCCTTCCTT 4895226 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| || ||||| ||||| || | || || || | |||||| Sbjct 4895227 GTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGGACGACTCAACTTCGAGCGTGAT 4895286 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||||||| ||||| | ||| | ||||| Sbjct 4895287 CGTCTTCCCCGTCAAGGTTTTCACGAAGATCTGCAT 4895322 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || ||| | ||| |||||| || || |||| ||||| || | || || | || || Sbjct 4894882 CAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCGTC 4894941 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | |||||| || || ||||| || || |||||||| |||||||| ||||||||||| Sbjct 4894942 TTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCCTTGTC 4895001 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| ||| || ||||| ||||| ||| | ||||| || | ||| ||||| Sbjct 4895002 CTGAATCTTGCTCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTAATCGT 4895061 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| |||||||||||||| Sbjct 4895062 CTTTCCCGTCAAAGTTTT 4895079 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| ||| || || | ||||| Sbjct 4895339 AGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGGCCATCC 4895398 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || || || || |||||||| ||||| || || ||||| Sbjct 4895399 TCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCC 4895458 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || || || || | ||||| ||| Sbjct 4895459 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTC 4895518 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | ||| | ||||| Sbjct 4895519 TTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 >seq19 Length=26846 Score = 118 bits (130), Expect = 3e-21 Identities = 188/269 (70%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 |||||||||| || | | ||||| ||| | |||||| ||||| | | |||| Sbjct 5039 TATATTTAATGTTCGCAGTATTTTCAGGTTTAGCAGGTACAGCTTTTTCAGTATTAATAA 4980 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | ||||||||| | | || ||| ||| | | | |||| ||| | || || Sbjct 4979 GATTAGAATTATCAGGGCCTGGTGTACAATTTATAGCAGATAAT---CAATTATATAATA 4923 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 ||| || || || ||||| | || ||||| |||||| | || ||||| | | | |||| Sbjct 4922 GTATAATAACTGCTCATGCTATAGTGATGATCTTCTTTATGGTAATGCCAGCTTTAATAG 4863 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || |||| || | || |||||||| |||| ||| |||||||| ||||| | Sbjct 4862 GTGGTTTTGGTAATTTTTTATTACCCTTAATGATAGGTGGTCCAGATATGGCATTTCCTA 4803 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTA 7713 | | || |||||||||||||||||| || Sbjct 4802 GATTAAATAATATAAGTTTTTGATTATTA 4774 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||||||||| || | |||||||| || || || | Sbjct 4363 TTCTGGATGACCAAAAAATCAAAATAAATGTTGGTATAATATAGGATCACCACCACCAGC 4422 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | || ||||| |||||||||||||||||| |||||||| Sbjct 4423 TACTTCGAAAAATGAAGTATTAAAATTTCTATCTGTTAAAAC 4464 >seq9 Length=3042725 Score = 116 bits (128), Expect = 9e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||| ||||||||||||||||| || |||| |||||| |||| | || Sbjct 1318709 CGAAGGCGCAAGACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTG 1318768 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || ||||| ||||||||||| || || || ||||| || ||||| ||| Sbjct 1318769 CGACCGTCTTCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCT 1318828 Query 225613 TCCTTGTCT 225621 ||||||||| Sbjct 1318829 TCCTTGTCT 1318837 >seq7 Length=2048283 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| || ||| | || ||||| |||||||| || |||||||| Sbjct 22034 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATC 21975 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| ||||| || ||||||||||| |||||||| ||| ||| ||| Sbjct 21974 AAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 21915 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| || | || || || | ||||| ||||||||||| Sbjct 21914 ATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 21871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529916538296