Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 8e-15 seq7 95.1 3e-14 seq4 84.2 5e-11 >seq3 Length=8560927 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||| || ||||||||||| || | | || | || ||||| | Sbjct 4894888 CAAG-TGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCGTCTTCCA 4894946 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| ||||| || | ||| ||||||| || || |||||||| || |||| Sbjct 4894947 ACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCCTTGTCCTGAA 4895006 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| || ||||| || || || ||||| || || | Sbjct 4895007 TCTTGCTCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTAATCGTCTTTC 4895066 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||| ||||| |||| |||||| Sbjct 4895067 CCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| || ||||||||||| ||| | || | Sbjct 4895332 GAGACGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCG 4895391 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| |||||||| || || | ||||||||| | | || || || Sbjct 4895392 GCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATGCCCTC 4895451 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGA 152063 || || || || || ||||| | || | | ||| ||| | ||| || |||||| Sbjct 4895452 TTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGA--CTCGACCTCAAGA 4895509 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || | || |||||||||| |||||| Sbjct 4895510 GTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 >seq7 Length=2048283 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| ||| | ||| | || ||||| || || ||||||||||| Sbjct 22034 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATC 21975 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||| | || ||| |||||||| || || || || |||||| | || Sbjct 21974 AAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 21915 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || ||| || || || || || || ||||||||||| ||||| |||||| Sbjct 21914 ATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 21855 >seq4 Length=4919768 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/283 (67%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 ||||||||| | ||||| |||| | || ||| | || ||| || ||| | |||| Sbjct 3842213 TTCTATGCCCTGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGAACCAAGAGTGG 3842154 Query 115689 AGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAG 115748 | ||||| || || |||| ||||||||||| | ||| || ||||| || || || Sbjct 3842153 ACACTCTTCTGCCCTCATGAGGCCCCTGGTCTAGCTGACGTCTATGGCGACGACTTCAAG 3842094 Query 115749 AATCTTTACGAAAGGTACGAGAAAGAGGGAAGAG---CCAAAAGGGTTGTGAAGGCGCAA 115805 | || ||||| || |||||||| |||||| | | | | | |||| ||||| || Sbjct 3842093 GAACTGTACGAGAGATACGAGAAGGAGGGACGTGGTCGCCAGACGGTT---AAGGCCCAG 3842037 Query 115806 GACCTTTGGCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTAC 115865 | || ||| || |||||| | ||||| | ||| || | |||| || ||| Sbjct 3842036 AAGCTATGGTATGCTATCCTCGAGGCACAGACCGAGACTGGGACCCCCTACATGCTTTAC 3841977 Query 115866 AAAGATGCAGTTTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908 || || || | |||||||||| || ||||| || |||| Sbjct 3841976 AAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAACTTGGGTA 3841934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819558200364