Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 168 1e-36 seq7 129 1e-24 >seq3 Length=8560927 Score = 168 bits (186), Expect = 1e-36 Identities = 178/229 (78%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||| || | |||| |||| ||||| || || |||||||||||||||| Sbjct 4894868 CCGCCACGCAACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 4894927 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| || || | || || ||||||||||||| || |||||||| |||| Sbjct 4894928 AGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGA 4894987 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || || |||||||| || ||| ||||| || ||| | ||||| ||||||| |||| || | Sbjct 4894988 ATGCCTTCCTTGTCCTGAATC-TTGCTCTTGACGTTGTCGATCGTGTCCG-AGCTCTCCA 4895045 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || |||||||| ||||||||||| || || || |||||||| Sbjct 4895046 CCTCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCAT 4895094 Score = 165 bits (182), Expect = 2e-35 Identities = 166/213 (78%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || ||||| || | ||| ||| || |||||||| ||||| | || || ||||||||| Sbjct 4895111 AGCACCAGGTGGAGCGTCGATTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCC 4895170 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | ||| || || |||||||||| || |||||||| ||| || || |||||||| Sbjct 4895171 TCCAATTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGCGGGATGCCTTCCTTGTCC 4895230 Query 283008 TGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGT 283066 |||||| ||||| || ||| | ||||| ||||| || | || |||||||| |||||||| Sbjct 4895231 TGGATC-TTGCTCTTGACGTTGTCGATCGTGTCGGACGACTCAACTTCGAGCGTGATCGT 4895289 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| || || ||||| |||||||| Sbjct 4895290 CTTCCCCGTCAAGGTTTTCACGAAGATCTGCAT 4895322 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || ||||| || | ||| || || |||||||||||||| Sbjct 4895324 CCACCGCGGAGACGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 4895383 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||||||||| || ||||| ||||| || || | || || ||||| ||| Sbjct 4895384 AGCGTCCGGCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGA 4895443 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| |||||||| | || ||| | ||||| ||||| | ||||| Sbjct 4895444 ATGCCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACC 4895503 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||| || || ||||| |||||||| Sbjct 4895504 TCAAGAGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 4895550 >seq7 Length=2048283 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| || || ||||| || || || || || ||||| |||||| Sbjct 22034 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATC 21975 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| ||| || || |||||||| |||||||| | || || | ||| Sbjct 21974 AAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 21915 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 21914 ATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 21856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738073446936