Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 138 8e-28 seq7 111 1e-19 >seq3 Length=8560927 Score = 138 bits (152), Expect = 8e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| ||| || ||||||||||| ||||||||||| || | || || |||| Sbjct 4894882 CAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCGTC 4894941 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| |||||| ||||||||||||| ||||| || || | || | |||||||| || Sbjct 4894942 TTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGAATGCCTTCCTTGTC 4895001 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| ||| | | | || ||||| | | |||||||||| ||||||||| Sbjct 4895002 CTGAATCTTGCTCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTAATCGT 4895061 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| | || ||||| ||||| |||||| Sbjct 4895062 CTTTCCCGTCAAAGTTTTCACAAAGATCTGCATG 4895095 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 44122 TCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTC 44181 ||| | ||||||||| ||||| ||||| |||||||| || |||| ||| || | Sbjct 4895107 TCTGAGCACCAGGTGGAGCGTCGATTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCC 4895166 Query 44182 GTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTT 44241 || |||| ||||| || |||||||||| ||||| || || | || | |||||||| Sbjct 4895167 ATCCTCCAATTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGCGGGATGCCTTCCTT 4895226 Query 44242 TTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| ||| | | | || ||||||| || || || || | ||| || Sbjct 4895227 GTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGGACGACTCAACTTCGAGCGTGAT 4895286 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| ||||| | ||| ||||||||||| |||||| Sbjct 4895287 CGTCTTCCCCGTCAAGGTTTTCACGAAGATCTGCATG 4895323 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| ||||| |||||| ||||||||||| ||| || || | || || Sbjct 4895342 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGGCCATCCTCG 4895401 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||| || || | |||||||| || | ||| | || || || ||| Sbjct 4895402 AGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 4895461 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||||||| ||| || ||||| | || || ||||| Sbjct 4895462 ATCTTGGACTTGACGTTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTG 4895521 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || | ||| ||||||||||| |||||| || Sbjct 4895522 CCAGTCAAGGTTTTCACGAAGATCTGCATGGTG 4895554 >seq7 Length=2048283 Score = 111 bits (122), Expect = 1e-19 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| || || |||| || |||||||| ||||| |||| Sbjct 22036 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGA 21977 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | |||||||| ||| ||||| ||| || ||| Sbjct 21976 TCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 21917 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| || || ||||| | || || ||||| |||||||||||||| || Sbjct 21916 --CGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 21859 Query 44326 GAAG 44329 |||| Sbjct 21858 GAAG 21855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990031459828