Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 seq7 129 1e-24 >seq3 Length=8560927 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || || || ||||| || ||||| || | ||| Sbjct 4895547 CAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGAC 4895488 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| ||||||||||| || || ||||| |||||||| Sbjct 4895487 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGCATTCCTCCCGACCAGCAG 4895428 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||||||||| ||||| |||| || ||| || ||| || Sbjct 4895427 CGCCTCATTTTCGCCGGCAAACAGCTCGAGGATGGCCGGACGCTGAGCGACTACAACATC 4895368 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 4895367 CAGAAGGAGTCGACGCTGCACCTGGT 4895342 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||| | || ||||| ||||| || || |||||||| ||||| ||| Sbjct 4895091 CAGATCTTTGTGAAAACTTTGACGGGAAAGACGATTACGCTGGAGGTGGAGAGCTCGGAC 4895032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| ||||| || || |||||||| || Sbjct 4895031 ACGATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAAGGCATTCCGCCGGACCAACAG 4894972 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||| | ||||| || |||| || | || || ||| || Sbjct 4894971 CGCCTGATCTTTGCCGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCTGACTACAACATC 4894912 Query 178104 CAAAAAGA 178111 || || || Sbjct 4894911 CAGAAGGA 4894904 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || || |||||||| ||||| || || || ||| Sbjct 4895319 CAGATCTTCGTGAAAACCTTGACGGGGAAGACGATCACGCTCGAAGTTGAGTCGTCCGAC 4895260 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| ||||| ||||| |||||||| || Sbjct 4895259 ACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAACAG 4895200 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || | || ||||| | ||||| |||| |||||| || Sbjct 4895199 CGCCTGATCTTTGCGGGCAAGCAATTGGAGGATGGCCGAACTCTCTCCGACTATAACATC 4895140 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || || || Sbjct 4895139 CAGAAGGAATCGACGCTCCACCTGGT 4895114 >seq7 Length=2048283 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| || || ||||| ||| Sbjct 21856 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACGATC 21915 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| ||||| ||||| || |||||||| || | Sbjct 21916 GACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCTTG 21975 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| ||||| || | ||||| ||| || ||| |||| || Sbjct 21976 ATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTGAGCGACTACAACATCCAGAA 22034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729904484296