Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20bantiana_20[genbank_20GCA_5F900092765.1_202016- 09-07] 84 sequences; 37,087,895 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq9 123 2e-23 seq7 104 2e-17 >seq3 Length=8560927 Score = 147 bits (162), Expect = 2e-30 Identities = 177/234 (76%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || | || || |||| || || |||||||||||||| ||||| ||||| || Sbjct 4894867 GCCGCCACGCAACCGCAAGACCAAGTGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGA 4894926 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | |||||||||||| || ||||||||||||||||||| || Sbjct 4894927 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGCGG 4894986 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTC---GCTCGAC 41809 || || ||||||||| ||| | ||||| | ||| | | | ||||| ||| | Sbjct 4894987 AATGCCTTCCTTGTCC-TGA-ATCTTGCTCTTGACGTTGTCGATCGTGTCCGAGCT---C 4895041 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||||| ||| ||||| || ||||||| || || || || ||||||||| Sbjct 4895042 TCCACCTCCAGCGTAATCGTCTTTCCCGTCAAAGTTTTCACAAAGATCTGCATG 4895095 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||||| | | |||||| || ||||| |||||||| |||||||||||||| Sbjct 4895095 GCCGCCGCGTAATCTGAGCACCAGGTGGAGCGTCGATTCCTTCTGGATGTTATAGTCGGA 4895154 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || || | |||||||| || || ||||||||||||||||||| || Sbjct 4895155 GAGAGTTCGGCCATCCTCCAATTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGCGG 4895214 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| ||| | | | |||||| |||||| | Sbjct 4895215 GATGCCTTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCGATCGTGTCGGACGACTCAA 4895273 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| ||||| || ||||||| || || ||||| ||||||||| Sbjct 4895274 CTTCGAGCGTGATCGTCTTCCCCGTCAAGGTTTTCACGAAGATCTGCATG 4895323 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| |||||||| ||||||||| ||||| |||||| Sbjct 4895323 GCCACCGCGGAGACGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 4895382 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || |||||||| ||||||||||| || |||||||| ||||| | || Sbjct 4895383 CAGCGTCCGGCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGG 4895442 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||| |||||| ||| || ||| ||| | | | |||||||| ||||| | Sbjct 4895443 AATGCCCTCTTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGCTGGACTCGA 4895501 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || |||| || || ||||| ||||||||| Sbjct 4895502 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATG 4895551 >seq9 Length=3042725 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || || ||||| || || ||| |||||||| || || ||||||| Sbjct 1318701 CGCCACCGCGAAGGCGCAAGACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGG 1318760 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||||||| |||| || || |||||||| ||||| ||||||||||| ||||||| | Sbjct 1318761 AGAGGGTGCGACCGTCTTCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAG 1318820 Query 41754 GAACGCTCTCCTTGTC 41769 ||| || |||||||| Sbjct 1318821 GAATGCCTTCCTTGTC 1318836 >seq7 Length=2048283 Score = 104 bits (114), Expect = 2e-17 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| || || || |||| || ||||||||||||||||| | Sbjct 22036 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGA 21977 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | || | || ||||||||| ||| || ||| || | Sbjct 21976 TCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGT 21917 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| |||||| ||||| | || || || || ||||| || ||||| || Sbjct 21916 CG--ATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 21859 Query 41851 GAA 41853 ||| Sbjct 21858 GAA 21856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303514580800