Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10 168 8e-37 seq21 91.5 2e-13 >seq10 Length=3900288 Score = 168 bits (186), Expect = 8e-37 Identities = 396/590 (67%), Gaps = 16/590 (3%) Strand=Plus/Minus Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 |||||| || || |||||| | || | | |||| | | | ||| | ||||| || Sbjct 3135535 TTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGG 3135476 Query 54148 TTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 54207 |||||||| |||| | | | || || || || || || ||||| || | ||| | || Sbjct 3135475 CTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGC 3135416 Query 54208 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 54267 |||||||| | || | | ||| ||||| | ||||| || | |||||||| || | Sbjct 3135415 CGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGC 3135356 Query 54268 GATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325 |||||| ||| | |||||||| | | ||||| | || || || || || | Sbjct 3135355 AATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGA--GGCCAATACCACCAGCTGTC 3135298 Query 54326 TTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCTCTATACTATCATCCAT 54384 || ||||| | || || ||| || | || || ||||| ||||| || || || ||| | Sbjct 3135297 TTGGAGATCATGGCACA-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTT 3135239 Query 54385 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 54444 ||||| | | || ||| || | ||| | | ||||||||||| || | || Sbjct 3135238 CATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGT 3135179 Query 54445 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTC 54504 || || || || || || || || | || | |||||||| |||||||| || || Sbjct 3135178 CGGGGATGCATGAGTGAAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTC 3135119 Query 54505 TATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 ||||| || | |||| || || || |||||||| | ||| ||||| |||| || Sbjct 3135118 AATATCGTCGCCGTGGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTT 3135063 Query 54561 CAACGATCTTG-TTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 | ||| |||| ||| || || |||| ||| ||||| ||||| || ||||| ||||| Sbjct 3135062 CGGCGA-CTTGCTTGCCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAG 3135004 Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATC 54669 || | ||| ||||| || ||||| | || | |||||||||| ||| Sbjct 3135003 TATTGGTAGTTGAAGTCCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/291 (67%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||||||||| | || | | || || || |||||||| || || || ||| Sbjct 3136824 GTGAATTGAATGGGTTGTGTGGCAGCCATGGTGCGGAGGTAGTACATGCCGGTCTTGAGA 3136765 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || ||| ||||| ||| | |||| |||| || | Sbjct 3136764 CCCATCTTCCAGCCAGCAAAGTGCATGGATGTGATTTTGCCCATGGTCGGTTCCTTCAAG 3136705 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| |||| |||||| || ||||||||||| || | |||||| ||||||| | | Sbjct 3136704 TGGATGTTCAGAGATTGGGACTGGTCGATGAAGGCACCTCGGTCTGCCGCCATTTGGAGG 3136645 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 53046 || ||| ||| |||||||| | ||| || || ||| | ||| || || | || | Sbjct 3136644 ATTGTCCGTTGACTGATTTCCCAGACAGTCTTGTACAACGC-CTTGATGTCAGCAGGGAT 3136586 Query 53047 GTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 ||| | | ||||||| || |||||||| | ||||| | ||||| || Sbjct 3136585 GTTGGGGATGTTCTGAACTGAACCACCATCGGCGATAATACGGTTCTTCAT 3136535 >seq21 Length=3175452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/336 (66%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 ||||| | || || ||||| |||||| ||| | |||||||| | | || | ||| Sbjct 2034961 ATGTTGCAGCAGCAGGCATGCAAAATCGGTGTGCATGCCCTCGTCACGAGAGATGAGTTC 2034902 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 || ||||| || || || ||||| ||||| | || ||||| || || | || || Sbjct 2034901 ATTTGAAAAGGTAAGGCCCGGCATCAGGCCCTTGCTCTTGAGCCAGAAGATTGCAGCGAA 2034842 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACC 24298 || || |||||||| || || || || || || || |||| |||| || || | Sbjct 2034841 CGACCCGGAAAAGAAGATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCAAAGGT 2034782 Query 24299 GG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 || | |||| |||||| | ||||||| ||||||||||| | || || || Sbjct 2034781 GGACTCCTTGTCGGAGATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 2034722 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 || || ||||||| || || || | || || || || || || || || || || Sbjct 2034721 GGTGTCGATAGCATCGAACAGGTATGTCTTCTCTTTGGGGTCCTTCACGTAGGTGTCGAT 2034662 Query 24416 CAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451 | || |||||| ||||| || ||||| || || Sbjct 2034661 GAGGAGTGAATACATCTCCGAGTGGATGTTCTCCAT 2034626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721429305040