Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016-
08-09] 23 sequences; 29,805,862 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq21 226 3e-54
seq12 129 6e-25
seq9 120 3e-22
>seq21
Length=3175452
Score = 226 bits (250), Expect = 3e-54
Identities = 516/787 (66%), Gaps = 61/787 (8%)
Strand=Plus/Plus
Query 116638 GTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTC 116697
|||| |||||||||| |||||||| || ||||| | || || || || |||||
Sbjct 2034339 GTGGAACATGTACAAACGTGCCGAGGCTAGCTTTTGGACAGCAGAAGAAGTCGATCTGTC 2034398
Query 116698 CAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
||||| | ||| ||| | || ||||| || | |||||| | ||| || ||
Sbjct 2034399 AAAGGATCTGCACGATTGGCACAACCGACTGAACAACGATGAGCGCTACTTCGTCTCCCA 2034458
Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814
||| || ||||| ||||| || ||||| |||||||||||||||||| | ||||||||
Sbjct 2034459 CGTTCTTGCCTTCTTCGCTGCTTCAGACGGTATCGTCAACGAGAATCTGCTGGAGCGTTT 2034518
Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG------------------ 116856
| || |||||||| | ||||| || |||||||| ||
Sbjct 2034519 TAGTGCCGAAGTGCAGGTCCCTGAGGCACGCTGCTTCTATGGGTACGCGTCCATGTCCCC 2034578
Query 116857 ----------------------------------CTTTCAGATCGCCATGGAGAACGTGC 116882
||||||| || ||||||||| | |
Sbjct 2034579 TACACTGCTGCCTCAGACACTAATGGCTTCGCAGCTTTCAGGTCATGATGGAGAACATCC 2034638
Query 116883 ACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCC 116942
||||||| |||||||| |||||||||||| |||||| | | ||||||
Sbjct 2034639 ACTCGGAGATGTATTCACTCCTCATCGACACCTACGTGAAGGACCCCAAAGAGAAGACAT 2034698
Query 116943 GTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGC 117002
|||| | || ||||| || || || ||| || |||||||||| ||||| |||
Sbjct 2034699 ACCTGTTCGATGCTATCGACACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGA 2034758
Query 117003 GCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062
| |||||| ||| || ||| || |||| | | || ||||| || ||||| |||||||
Sbjct 2034759 GGTGGATCTCCGACAAGGAGTCCACCTTTGCTCAACGACTGGTTGCTTTCGCAGCCGTCG 2034818
Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122
|||| |||||||||| || ||||| || || || |||||||||| ||||| |
Sbjct 2034819 AGGGTATCTTCTTTTCCGGGTCGTTCGCTGCAATCTTCTGGCTCAAGAGCAAGGGCCTGA 2034878
Query 117123 TGCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180
|||| ||||| || ||||| || || |||||||| | |||||||| |||| |||
Sbjct 2034879 TGCCGGGCCTTACCTTTTCA--AATGAACTCATCTCTCGTGACGAGGGCATGCACACCGA 2034936
Query 117181 CTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA-GCGACCGAGCGCGGCGCGCGTCAGGG 117239
||||| || ||||| | | ||| | ||| | |||| | | || | || |
Sbjct 2034937 TTTTGCATGCCTGCTGCTGCAACATCTCAAGCACAAGCCCGATC-CAAAGCTCATCGAGA 2034995
Query 117240 AGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGC 117299
| || ||||||| || ||||| ||||| || ||| | ||||||||||| || ||
Sbjct 2034996 ACGTCATCACCGAGGCAGTCGCTATCGAAAAGGAGTTCTTAACCGAAGCGCTCCCTGTCG 2035055
Query 117300 GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGC 117359
|| ||||||| | || | | | |||| || ||||| ||||| ||||||||| |
Sbjct 2035056 GTTTGCTGGGCATGAACTCCAAGCTTATGTGTCAGTACATTGAGTTTGTCGCCGACCGTT 2035115
Query 117360 TGCTGCT 117366
|||||||
Sbjct 2035116 TGCTGCT 2035122
>seq12
Length=2267901
Score = 129 bits (142), Expect = 6e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || |||||||| || || || ||||| |||||||| | || ||||| ||| |
Sbjct 993846 ATGCAGATTTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 993905
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| || ||||| || | || |||
Sbjct 993906 GACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 993965
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||| || |||||||| || || | |||||||| | ||||||||||
Sbjct 993966 CAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 994025
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||| ||| | || || || || ||
Sbjct 994026 ATCCAGAAAGAGTCAACCCTACACCTGGT 994054
Score = 123 bits (136), Expect = 3e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||| | || ||||| || ||||| |||| || ||| | |
Sbjct 994302 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACGATCACACTCGAGGTTGAATCTTCA 994361
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || |||| || || ||||||||||| |||||||
Sbjct 994362 GACACAATTGACAACG-TCAAGACGAAGATTCAGGATAAGGAGGGCATCCCACCGGACCA 994420
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || || ||||| || |||| || || ||| || |||||
Sbjct 994421 ACAACGATTGATCTTCGCTGGTAAGCAGCTTGAAGACGGCCGTACACTCTCAGATTACAA 994480
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| |||||||| ||
Sbjct 994481 CATCCAGAAGGAATCCACTCTGCATCTCGT 994510
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || ||||| |||||||| |||| || || |||
Sbjct 994074 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCAGT 994133
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| || || || ||||| || | || ||
Sbjct 994134 GACACCATCGACAACG-TCAAGAGCAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCA 994192
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| ||||||| || || || || || || || | |||||||| |||||||||
Sbjct 994193 GCAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACCCTTTCCGACTACAA 994252
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||| || |||| || ||||| ||
Sbjct 994253 CATCCAGAAAGAATCCACTCTCCATCTCGT 994282
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| || || || | || || || | |
Sbjct 994530 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACTATTACGCTGGAAGTTGAGAGCTCA 994589
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||| || || | ||||| ||||| ||||| | |||||
Sbjct 994590 GACACCATCGACAACG-TCAAATCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 994648
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||| |||| || ||||| || || || || | || ||||| |||||||||
Sbjct 994649 GCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGCCGGACCCTATCCGACTACAA 994708
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| ||| ||||
Sbjct 994709 CATCCAGAAGGAGAGCACCTTGCA 994732
>seq9
Length=4529175
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| |||| |||||| || |||||| |
Sbjct 3500875 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCCGACACGATC 3500934
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | |||| || || | ||||| || |||||||| |||||||||| || |
Sbjct 3500935 GACAATGTCAAATCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGGTTG 3500994
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||||||||| || || || || | || || || | ||||||||| |||||||||
Sbjct 3500995 ATCTTCGCGGGCAAGCAACTCGAGGATGGCCGGACGCTGAGCGACTACAATATCCAGAAG 3501054
Query 40879 G 40879
|
Sbjct 3501055 G 3501055
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| || || ||||| | |||||||| || || |||| ||| ||||| || || ||
Sbjct 1601800 GACAAGGAAGGGATCCCTCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAACTCGAA 1601741
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||| || ||||||||||||||||||||| | || || || || || ||
Sbjct 1601740 GACGGCCGCACGCTTTCCGACTACAACATCCAGAAGGAATCGACCCTTCACCTGGTCCTG 1601681
Query 40903 CG 40904
||
Sbjct 1601680 CG 1601679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219051874480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |