Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 seq9 105 8e-18 >seq12 Length=2267901 Score = 111 bits (122), Expect = 2e-19 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 || |||||| ||||| ||||||||||| || || ||||| || | || ||||| | || Sbjct 994742 CAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGATAGGGTCCGGCCATC 994683 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| || || || || |||| ||||||||||| || | | ||||||||| Sbjct 994682 CTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTC 994623 Query 43091 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 43146 | ||| || ||||| ||| | | | ||||| |||| || || || | ||| | Sbjct 994622 CTGGATCTTGGATTTGA-CGTTGTCGATGGTGTCTGAGCTC---TCAACTTCCAGCGTAA 994567 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| ||||| || ||||| Sbjct 994566 TAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Score = 105 bits (116), Expect = 8e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||| ||||| || || |||||||| | || || || |||| || ||||| Sbjct 994505 ATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCCGTCTTCAAGCTG 994446 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 |||||||||||| || | ||| || ||||| | || | || |||||| ||| ||| | | Sbjct 994445 CTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTTATCC-TGAATCT 994387 Query 43100 TTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 43157 | || |||| ||| | | | ||||| ||||| || |||| ||||| || ||||| Sbjct 994386 TCGTCTTGA-CGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGATCGTCTTGCCA 994328 Query 43158 GTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||||||||| Sbjct 994327 GTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| || ||| || || | || || ||||| ||||||||||| Sbjct 994037 CTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAA 993978 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| || | || | || ||||||||| ||| || |||| | Sbjct 993977 GATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATT 993918 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||||| || || || || | |||||||| ||||| || || |||||||| Sbjct 993917 GTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTAC 993858 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 993857 GAAAATCTGCAT 993846 >seq9 Length=4529175 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42985 ATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTAC 43044 |||||| | |||| || |||||||| || ||| ||||| | || || || ||||| | Sbjct 3501064 ATGTGCGCACCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGC 3501005 Query 43045 CAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTT 43104 | ||||| || | ||||||||||| | || | || ||||||||| ||| || || Sbjct 3501004 CCGCGAAGATCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATT 3500945 Query 43105 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 ||| | | | ||||||| ||||| || |||| |||||||| |||||||| || | Sbjct 3500944 TGACATTGTCGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGG 3500885 Query 43165 TCTTTACAAAG 43175 |||| || ||| Sbjct 3500884 TCTTGACGAAG 3500874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817435602440