Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq12 105 4e-18 seq9 93.3 3e-14 >seq12 Length=2267901 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||||| || |||||||| |||||||||||| | Sbjct 994072 CCGCCACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTC 994013 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| || || ||||| ||||| |||||||| || || Sbjct 994012 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 993953 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | | || | ||| | || ||||| Sbjct 993952 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACC 993893 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || || || || || ||||||||| Sbjct 993892 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCATC 993845 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| |||||||||| ||| || || || || ||||| |||||||||||||| Sbjct 994756 CCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGAT 994697 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||| || || || || | |||||||||| || Sbjct 994696 AGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGG 994637 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| || | | | | || | || | || || Sbjct 994636 ATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGCTCTCAACT 994577 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || ||||| || || || || ||||| |||||||| Sbjct 994576 TCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 >seq9 Length=4529175 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||| |||||||| | || ||| ||||| |||||||||||||| Sbjct 1601667 CCGCCGCGGAGACGCAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAA 1601726 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276 ||| ||| |||| || | |||||||| ||||| || || |||||||||||| Sbjct 1601727 AGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCG 1601780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| || ||||||||| |||| ||| | || || | |||||||| ||||| || Sbjct 3501053 TTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGATC 3500994 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | |||||||||||| || | || |||||||| ||||| || | || | | Sbjct 3500993 AACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGTCG 3500934 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| |||| |||||||| || | |||||||| ||||| ||||| || || || ||| Sbjct 3500933 ATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 3500874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071909438880