Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016-
08-09] 23 sequences; 29,805,862 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq12 105 4e-18
seq9 93.3 3e-14
>seq12
Length=2267901
Score = 105 bits (116), Expect = 4e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || |||||||||| || |||||||| |||||||||||| |
Sbjct 994072 CCGCCACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTC 994013
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||| || || ||||| ||||| |||||||| || ||
Sbjct 994012 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 993953
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || |||||||| ||||| ||| | || | | || | ||| | || |||||
Sbjct 993952 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACC 993893
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | |||||||| ||||| || || || || || || |||||||||
Sbjct 993892 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCATC 993845
Score = 98.7 bits (108), Expect = 6e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| |||||||||| ||| || || || || ||||| ||||||||||||||
Sbjct 994756 CCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGAT 994697
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | |||||||| || || || || | |||||||||| ||
Sbjct 994696 AGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGG 994637
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| || | | | | || | || | || ||
Sbjct 994636 ATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGCTCTCAACT 994577
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || ||||| || || || || ||||| ||||||||
Sbjct 994576 TCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530
>seq9
Length=4529175
Score = 93.3 bits (102), Expect = 3e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| || | ||| |||||||| | || ||| ||||| ||||||||||||||
Sbjct 1601667 CCGCCGCGGAGACGCAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAA 1601726
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG 34276
||| ||| |||| || | |||||||| ||||| || || ||||||||||||
Sbjct 1601727 AGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCG 1601780
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| || ||||||||| |||| ||| | || || | |||||||| ||||| ||
Sbjct 3501053 TTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGATC 3500994
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| |||||||||||| || | || |||||||| ||||| || | || | |
Sbjct 3500993 AACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGTCG 3500934
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|||| |||| |||||||| || | |||||||| ||||| ||||| || || || |||
Sbjct 3500933 ATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 3500874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071909438880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |