Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq10 129 1e-24 >seq10 Length=3900288 Score = 129 bits (142), Expect = 1e-24 Identities = 595/926 (64%), Gaps = 30/926 (3%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATG-GCAA 248876 ||| | | ||||| || || ||| |||||||||| || || ||||| || | |||| Sbjct 3134996 TACCAATACTTTGGCTTTAAGACGTTGGAGAAATCATACCTGCTCAAGATCGGCAAGCAA 3135055 Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 | ||| |||||| ||||| ||| | ||||| ||||||||||| || ||| || || Sbjct 3135056 G-TCGCCGAACGACCACAGCATATGATCATGCGTGTGGCTGTCGGCATCCACGGCGACGA 3135114 Query 248937 CATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCAC 248996 || |||| | ||||||| |||| ||| | || | || ||||| | Sbjct 3135115 TATTGAGAAGGCCATCGAGACATACAATCTCATGTCCCAGAAGTGCTTCACTCATGCATC 3135174 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCA-ACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 ||||| |||||||| || || || | || | ||||| ||| ||||| | | | Sbjct 3135175 CCCGACACTCTTCAATGCGGGAAC-GCCACAGCCCCAGCTATCCTCCTGCTTCTTGATCG 3135233 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGA 249112 |||| | || ||| |||| || || || ||||| || || |||| || | || Sbjct 3135234 ACATGAAGGAGGACAGCATCGAGGGTATCTACGACACTCTCAA---GACGTGTGCCATGA 3135290 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTC-CAACATCCGAGCGAAGGGTTCG 249171 | || || || || || || || ||| | ||| | ||| || || | ||| || Sbjct 3135291 TCTCCAAGACAGCTGGTGGTATTGGCCTCAATG-CTCACTGCATTCGTGCAACGGGATCC 3135349 Query 249172 TACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAG 249231 || || ||| || ||||| | |||| || | ||| | || || || || | Sbjct 3135350 TATATTGCAGGAACCAATGGAACCTCAAATGGCCTCATTCCCATGCTCCG-TGTGTTCAA 3135408 Query 249232 TC-CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTA 249287 | ||| ||| | | | || |||||| ||| ||| ||| | |||||||| || Sbjct 3135409 TAACACGGCCCGCTACGTCGACCAGGGCGGCAATAAGCGACCGGGCGCTTTCGCCATCTA 3135468 Query 249288 TTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAA 249347 ||||| |||||||||||| | || |||||| || || | | ||||||| ||||||| Sbjct 3135469 CTTGGAGCCCTGGCACGCCGATGTCTTTGAGTTCTTGAACCTAAGAAAGAACCACGGCAA 3135528 Query 249348 CGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCG 249407 ||| || | || |||||| | ||||| | ||||| |||||||||||||| Sbjct 3135529 GGAGGAAATCCGGGCTCGTGACTTGTTCTATGCGATGTGGACTCCCGACTTGTTCATGGA 3135588 Query 249408 CCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT-CCGTC-CGACGCCCCGGACCTC 249465 || ||| || || || ||||| || ||||| || || || || || | || Sbjct 3135589 GCGTGTCGAGAAGAACCAGGAATGGACTCT--TTTCTGCCCTCATGAAGCTCCAGGTCTT 3135646 Query 249466 ATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATC 249525 |||| | |||||| ||||||| | | ||| ||| ||||||| | ||| Sbjct 3135647 GCCGATGTGTACGGCGACGACTTCAAGGAGCTCTACGAGAGATACGAAAAGGAGGGCCGT 3135706 Query 249526 GGC---AAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGATA 249579 ||| ||||| ||||||| | || || | ||| | | | ||| |||||| Sbjct 3135707 GGCCGTCAGACAGTCAAGGCCCAGAAGCTGTGGTATGCCA---TCCTTGAGGCCCAGACT 3135763 Query 249580 GAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGG 249639 ||||| || || || | | ||| || || |||||| ||||| ||||| | Sbjct 3135764 GAGACGGGTACTCCCTACATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAG 3135823 Query 249640 CATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAG 249699 | | || ||||| || || |||||||| | ||| | | | ||| | || | Sbjct 3135824 AACTTGGGAACCATTCGAAGCTCCAATCTCTGCACCGAGATTGTCGAGTACACAGCCCCG 3135883 Query 249700 GAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| |||| |||||||| ||||| Sbjct 3135884 GATGAGGTTGCTGTCTGCAATCTGGC 3135909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766083574464