Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016-
08-09] 23 sequences; 29,805,862 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq12 125 6e-24
seq9 84.2 2e-11
>seq12
Length=2267901
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||| || ||| | |||||||||| |||||||||||||| ||||||||||||
Sbjct 994756 CCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGAT 994697
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| || | || || ||||| || ||||| || |||| | ||| |||||||| ||
Sbjct 994696 AGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGG 994637
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||||||||||| || || || || | | | |||| | ||| ||
Sbjct 994636 ATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGCTCTCAACT 994577
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||||| |||||||| ||||| ||||| ||||| || |||||
Sbjct 994576 TCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| | |||||| | || | ||||| ||| |||||||| |||||||| ||
Sbjct 994528 CCACCACGCAATCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAG 994469
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
||| || |||| || || || || || ||||| ||||| || |||||||| || ||
Sbjct 994468 AGTGTACGGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGG 994409
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||| ||| ||| || ||| || | | |||| | || |||
Sbjct 994408 ATGCCCTCCTTATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACC 994349
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | || ||||||||||| |||| || || ||||||||||||||
Sbjct 994348 TCGAGTGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||| ||||| |||||||||||| |||| ||| | || ||
Sbjct 994054 ACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 993995
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || ||||| || | ||||| || || ||||| | || |||||||||
Sbjct 993994 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 993935
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||| | || || ||||||
Sbjct 993934 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTG 993875
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| ||||| || || || |||||
Sbjct 993874 CCAGTCAGGGTCTTTACGAAAATCTGCAT 993846
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
|| ||||| |||||||||||| || |||| | || || ||||| |||||||| ||
Sbjct 994264 TCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAG 994205
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|| | || || || || ||||| | || ||||| || ||| || ||| ||
Sbjct 994204 ATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTGCTCTTGACGTTG 994145
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| | ||| ||||| | || || |||||||| ||||| ||||||||
Sbjct 994144 TCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACG 994085
Query 45326 AAGATTTGCAT 45336
|||||||||||
Sbjct 994084 AAGATTTGCAT 994074
>seq9
Length=4529175
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || |||||||| |||||||||||| || ||| |||| ||
Sbjct 1601685 ACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCG 1601744
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
||||| || |||||||| |||| ||||| ||||||||||| | || ||||||||
Sbjct 1601745 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTC 1601800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075089255483
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |