Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10 401 6e-107 seq21 185 8e-42 seq12 113 4e-20 seq9 89.7 5e-13 >seq10 Length=3900288 Score = 401 bits (444), Expect = 6e-107 Identities = 1238/1896 (65%), Gaps = 45/1896 (2%) Strand=Plus/Minus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || || || |||| | || ||| | ||||||| || || |||||| Sbjct 3136836 TCTTGGTCGACAGTGAATTGAATGGGTTGTGTGGCAGCCATGGTGCGGAGGTAGTACATG 3136777 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| |||||||||||||| | ||| || || || || | ||| || || Sbjct 3136776 CCGGTCTTGAGACCCATCTTCCAGCCAGCAAAGTGCATGGATGTGATTTTGCCCATGGTC 3136717 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | || || | || | || || ||| ||||| || || ||||| || || Sbjct 3136716 GGTTCCTTCAAGTGGATGTTCAGAGATTGGGACTGGTCGATGAAGGCACCTCGGTCTGCC 3136657 Query 22283 GCCATATTTATCAATGTACGCATCGAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 ||||| | | | ||| || | ||| |||||||| || |||||||||| | ||| Sbjct 3136656 GCCATTTGGAGGATTGTCCG--TTGACTGATTTCCCAGACAGTCTTGTACAACGCCTTGA 3136599 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 | || || || ||| |||| || || || || | || || || | Sbjct 3136598 TGTCAGCAGGGATGTTGGGGATGTTCTGAACTGAACCACCATCGGCGATAATACGGTTCT 3136539 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCAC 22458 | || | || ||| | || | | || || || || | ||| ||| |||| || Sbjct 3136538 TCATGTTGTCTGACCAGAGGCCAAGGTCGACCAGGTCCTTCAACAGCCATG--GGTTGAC 3136481 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 || |||||||| || | || ||| ||||| || |||||||| || | || || || Sbjct 3136480 GACCTGAAACTCACCAGCCAGGACACGGCGGGAATAGATGTTGGAAGTATATGGCTCAAA 3136421 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 |||| ||||| || || ||||| | ||| || ||||| ||||| || || | || || Sbjct 3136420 GCATTCGTTGTTGCCAAGAATCTGCGAGGTTGACGCGGTAGGCATGGGAGCAACAAGCAG 3136361 Query 22579 CGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638 ||||| | | |||| || | ||| | ||| || |||||||||||| || Sbjct 3136360 AGAGTTGCGAACCCCGTATTTGGCAATGTCGGCCTTCAGTGAGTCCCAGTCCCACAGGTC 3136301 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC----GCGACTCGCCGGGC 22694 ||| || || ||||| |||||| |||||||| | ||| | |||| |||| Sbjct 3136300 GGAAGGAGTAACATT---CCACATGTCGTATTGGAGAGTGCCTTGGGAGACT----GGGC 3136248 Query 22695 TGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACG 22754 | || ||||| ||||| || | || | | ||||| ||||| || | | Sbjct 3136247 TCCCCTCGTATGTTTCATAGGCGCCTTGCTCCCTTGCAAGCTCGCATGAAGCAGTGAGAG 3136188 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC----GGCGGCGGCGACGCTT 22810 | ||| || || ||||| ||||| | |||| | || | | ||| || Sbjct 3136187 CAGCGTGGTAAATGGTCTCAAAGATCTGGATGTTGAGTTGTCGAGCCTCCGGAGAG---- 3136132 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 || | |||| ||||| | ||| || || || | ||| ||||| || | ||| || Sbjct 3136131 TCAAAGGGCAGACGCAGGGCAAGGAATGCATCAGCAAGACCTTGAACACCAAGACCAATA 3136072 Query 22871 GGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATT 22930 || |||| | || || | || ||||| |||| |||||| | || ||||| Sbjct 3136071 GGGCGGTGTCGCATGTTGCTCTTCTTGGCCTCTGGCACAGGATAGTAGTTGATGTCGATG 3136012 Query 22931 GTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA 22990 | ||||||| || | |||||| | || || | | ||||| || Sbjct 3136011 ATCTTGTTCAAATTGCGGGTCACCACTTGGGTGACCTCGTGGAGGCGGCCGAAGTCATAC 3135952 Query 22991 ACGCC-CGA--TTGTACAACAAACTTGTTGACG-GCGATCGAGGCAAGATTGCATACGGC 23046 |||| || ||| | ||||| | | || | || | || || |||||||| || || Sbjct 3135951 TCGCCACGGCCTTGGTCGACAAAGGT-TGGAAGAGCCAGAGAAGCCAGATTGCAGACAGC 3135893 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||| || || |||||||| ||||| ||||| || |||||| | || || Sbjct 3135892 AACCTCATCCGGGGCTGTGTACTCGACAATCTCGGTGCAGAGATTGGAGCTTCGAATGGT 3135833 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || |||||||||| || | ||||| | |||||||||||||||||| || || Sbjct 3135832 TCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAGT 3135773 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 |||||||| ||| | ||| | ||| || ||||| |||| || | || ||| Sbjct 3135772 ACCCGTCTCAGTCTGGGCCTCAAGGATGGCATACCACAGCTTCTGGGCCTTGACT-GTCT 3135714 Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-A 23284 ||| | | ||| || | ||||| | | ||| | | | | || ||| | ||||| | Sbjct 3135713 GACGGCCACGGCCCTCCTTTTCGTATCTCTCGTAGAGCTCCTTGAAGTCGTCGCCGTACA 3135654 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTC 23343 || ||||| || || || | || ||| || || | ||| |||| || || || Sbjct 3135653 CA-TCGGCAAGACCTGGAGCTT-CATGAGGGCAGAAAAGAGTCCATTCCTGGTTCTTCTC 3135596 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 || || ||| || | || || |||| | || ||||||| || || || || | Sbjct 3135595 GACACGCTCCATGAACAAGTCGGGAGTCCACATCGCATAGAACAAGTCACGAGCCCGGAT 3135536 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 ||||| |||||| ||||||| | | | ||| || || || || || || ||||| || Sbjct 3135535 TTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGG 3135476 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 ||| | ||| | ||| || |||||||||| ||||||||||||||| |||||||| ||||| Sbjct 3135475 CTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGC 3135416 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 |||||| ||| |||| | ||||| || | ||| || || || | || || || Sbjct 3135415 CGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGC 3135356 Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 | | || || |||| |||| | |||| | | || || || || || | | || Sbjct 3135355 AATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGAGGCCAATACCACCAGCTGTCTT 3135296 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || ||||| || || || |||||||||||||| ||||||||||||||||| || | Sbjct 3135295 GGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCAT 3135236 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 ||| |||||| || || || | || | | ||||| | || ||| |||||||| Sbjct 3135235 GTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGTCGG 3135176 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 | || || || ||| | | ||||| |||||||| || |||||||| ||||| Sbjct 3135175 GGATGCATGAGTGAAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTCAAT 3135116 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC--C 23881 || || ||||| || |||| || || ||||| ||||| | || |||| ||| | | Sbjct 3135115 ATCGTCGCCGTGGATGCCGACAGCCACACGCATGATCATATGCTGTGGTCGTTCGGCGAC 3135056 Query 23882 GTG-ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 || |||| || |||| ||| ||||| | || ||| ||||| ||||| || | Sbjct 3135055 TTGCTTGCCG---ATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAGTATTG 3134999 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||||| ||||| || |||| || |||||||| || Sbjct 3134998 GTAGTTGAAGTCCCGGTCGTAGACGATGGCCGAGTT 3134963 >seq21 Length=3175452 Score = 185 bits (204), Expect = 8e-42 Identities = 341/493 (69%), Gaps = 14/493 (3%) Strand=Plus/Plus Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || |||||||| || |||||||| || |||||||||||| | Sbjct 2034626 ATGGAGAACATCCACTCGGAGATGTATTCACTCCTCATCGACACCTACGTGAAGGACCCC 2034685 Query 57864 GACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | ||||| || || |||||| | || ||||| || || ||| ||| ||||||||| Sbjct 2034686 AAAGAGAAGACATAC-CTGTTCGATGCTATCGACACCATCCCCTGCATCCGCAAGAAGGC 2034744 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAAT 57979 || ||| | | | ||||| || || || |||| || || | | || | Sbjct 2034745 CGACTGGGCTCTGAGGTGGATCTC---CGACAAGGAGTCCACCTTTGCTCAACGACTGGT 2034801 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || ||||| |||||||| ||||| |||||||| || || || ||||| || ||| | Sbjct 2034802 TGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCCGGGTCGTTCGCTGCAATCTTCTGGCT 2034861 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||| ||||||||||| ||||| || ||| || || | || || || ||||| Sbjct 2034862 CAAGAGCAAGGGCCTGATGCCGGGCCTTACCTTTTCAAATGAACTCATCTCTCGTGACGA 2034921 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCA---ATAAACCGAC 58156 ||| | || || |||||||| ||||| || || ||| | ||| | || || Sbjct 2034922 GGGCATGCACACCGATTTTGCATGCCTGCTG--CTGCAACA-TCTCAAGCACAAGCCCGA 2034978 Query 58157 GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | | | |||| | || | ||||||||||| ||||| |||||||| ||||| | || Sbjct 2034979 TCCAAAGCTCATCGAGAACGTCATCACCGAGGCAGTCGCTATCGAAAAGGAGTTCTTAAC 2035038 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 |||||| || || || | |||| || |||||| | | |||| |||||||||| Sbjct 2035039 CGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTCCAAGCTTATGTGTCAGTACATTGA 2035098 Query 58277 GTTTGTTGCCGAC 58289 |||||| |||||| Sbjct 2035099 GTTTGTCGCCGAC 2035111 >seq12 Length=2267901 Score = 113 bits (124), Expect = 4e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||| ||||| ||||| || ||||| | || || || | | Sbjct 993846 ATGCAGATTTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 993905 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| ||| || | | ||||||||||||| | || || || Sbjct 993906 GACACCATCGACAATGTCAA---GAGCAAGATCCAGGACAAGGAAGGCATTCCTCCTGAT 993962 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || |||||||| |||||| | || || || ||||||| || Sbjct 993963 CAGCAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 994022 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || || || ||||| || | || | ||||||| Sbjct 994023 AACATCCAGAAAGAGTCAACCCTACACCTGGTCCTCCGTCTTCGTGGCGGTA 994074 >seq9 Length=4529175 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| |||| || ||| | ||||||| || Sbjct 3500875 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCCGACACGATC 3500934 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | |||||| | || ||||||||||||| | || || ||||||||||| | Sbjct 3500935 GACAATGTCAAATCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGGTTG 3500994 Query 31322 ATATTCGCTGGCAAACA 31338 || ||||| ||||| || Sbjct 3500995 ATCTTCGCGGGCAAGCA 3501011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766271842160