Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016-
08-09] 23 sequences; 29,805,862 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq10 159 4e-34
seq21 109 7e-19
>seq10
Length=3900288
Score = 159 bits (176), Expect = 4e-34
Identities = 392/589 (67%), Gaps = 14/589 (2%)
Strand=Plus/Minus
Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385
|||||| || || |||||| | || | | |||| | | | ||| | ||||| ||
Sbjct 3135535 TTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGG 3135476
Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445
|||||||| ||||| | | | || || || || || || ||||| || | ||| | ||
Sbjct 3135475 CTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGC 3135416
Query 63446 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63505
|||||||| | || | | ||| ||||| | || ||||| | |||||||| || |
Sbjct 3135415 CGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGC 3135356
Query 63506 GATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563
|||||| ||| | |||||||| | | ||||| | || || || || || |
Sbjct 3135355 AATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGA--GGCCAATACCACCAGCTGTC 3135298
Query 63564 TTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATGCCTTCTATGCTATCATCGAT 63622
|| ||||| | || || ||| || | ||||| ||||| || || ||||| || || |
Sbjct 3135297 TTGGAGATCATGGCACA-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTT 3135239
Query 63623 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGT 63682
||||| | | || ||| || | ||| | | | ||||||||||| || | ||
Sbjct 3135238 CATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGT 3135179
Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63742
|| || || || || || || || | || | |||||||| ||||| || || ||
Sbjct 3135178 CGGGGATGCATGAGTGAAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTC 3135119
Query 63743 TATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798
||||| || | |||| || || || |||||||| | ||| ||||| |||| ||
Sbjct 3135118 AATATCGTCGCCGTGGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTT 3135063
Query 63799 CAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63858
| | | || ||| || || | || ||| ||||| ||||| || ||||| ||||| |
Sbjct 3135062 CGGCGACTTGCTTGCCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAGT 3135003
Query 63859 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907
| | ||| ||||| || ||||| | || |||| ||||| | |||
Sbjct 3135002 ATTGGTAGTTGAAGTCCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954
>seq21
Length=3175452
Score = 109 bits (120), Expect = 7e-19
Identities = 226/336 (67%), Gaps = 3/336 (1%)
Strand=Plus/Minus
Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625
||||| | || || ||||| |||||| ||||| |||||||| | | || | |||
Sbjct 2034961 ATGTTGCAGCAGCAGGCATGCAAAATCGGTGTGCATGCCCTCGTCACGAGAGATGAGTTC 2034902
Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685
|| ||||| || || || ||||| ||||| | || ||||| || || | ||||||
Sbjct 2034901 ATTTGAAAAGGTAAGGCCCGGCATCAGGCCCTTGCTCTTGAGCCAGAAGATTGCAGCGAA 2034842
Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745
|| |||||||||||||| || || || || || || |||| |||| | || |
Sbjct 2034841 CGACCCGGAAAAGAAGATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCAAAGGT 2034782
Query 33746 GG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33802
|| | |||| |||||| | ||||||| ||||||||||| | || || ||
Sbjct 2034781 GGACTCCTTGTCGGAGATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 2034722
Query 33803 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33862
|| || || |||| || || || | || || || || || || || || |||||
Sbjct 2034721 GGTGTCGATAGCATCGAACAGGTATGTCTTCTCTTTGGGGTCCTTCACGTAGGTGTCGAT 2034662
Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33898
| || |||||| ||||| || ||||| || ||
Sbjct 2034661 GAGGAGTGAATACATCTCCGAGTGGATGTTCTCCAT 2034626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817418927440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |