Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10 159 4e-34 seq21 109 7e-19 >seq10 Length=3900288 Score = 159 bits (176), Expect = 4e-34 Identities = 392/589 (67%), Gaps = 14/589 (2%) Strand=Plus/Minus Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 |||||| || || |||||| | || | | |||| | | | ||| | ||||| || Sbjct 3135535 TTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGG 3135476 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445 |||||||| ||||| | | | || || || || || || ||||| || | ||| | || Sbjct 3135475 CTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGC 3135416 Query 63446 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63505 |||||||| | || | | ||| ||||| | || ||||| | |||||||| || | Sbjct 3135415 CGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGC 3135356 Query 63506 GATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563 |||||| ||| | |||||||| | | ||||| | || || || || || | Sbjct 3135355 AATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGA--GGCCAATACCACCAGCTGTC 3135298 Query 63564 TTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 || ||||| | || || ||| || | ||||| ||||| || || ||||| || || | Sbjct 3135297 TTGGAGATCATGGCACA-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTT 3135239 Query 63623 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGT 63682 ||||| | | || ||| || | ||| | | | ||||||||||| || | || Sbjct 3135238 CATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGT 3135179 Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63742 || || || || || || || || | || | |||||||| ||||| || || || Sbjct 3135178 CGGGGATGCATGAGTGAAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTC 3135119 Query 63743 TATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798 ||||| || | |||| || || || |||||||| | ||| ||||| |||| || Sbjct 3135118 AATATCGTCGCCGTGGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTT 3135063 Query 63799 CAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63858 | | | || ||| || || | || ||| ||||| ||||| || ||||| ||||| | Sbjct 3135062 CGGCGACTTGCTTGCCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAGT 3135003 Query 63859 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 | | ||| ||||| || ||||| | || |||| ||||| | ||| Sbjct 3135002 ATTGGTAGTTGAAGTCCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954 >seq21 Length=3175452 Score = 109 bits (120), Expect = 7e-19 Identities = 226/336 (67%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 ||||| | || || ||||| |||||| ||||| |||||||| | | || | ||| Sbjct 2034961 ATGTTGCAGCAGCAGGCATGCAAAATCGGTGTGCATGCCCTCGTCACGAGAGATGAGTTC 2034902 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 || ||||| || || || ||||| ||||| | || ||||| || || | |||||| Sbjct 2034901 ATTTGAAAAGGTAAGGCCCGGCATCAGGCCCTTGCTCTTGAGCCAGAAGATTGCAGCGAA 2034842 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745 || |||||||||||||| || || || || || || |||| |||| | || | Sbjct 2034841 CGACCCGGAAAAGAAGATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCAAAGGT 2034782 Query 33746 GG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33802 || | |||| |||||| | ||||||| ||||||||||| | || || || Sbjct 2034781 GGACTCCTTGTCGGAGATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 2034722 Query 33803 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33862 || || || |||| || || || | || || || || || || || || ||||| Sbjct 2034721 GGTGTCGATAGCATCGAACAGGTATGTCTTCTCTTTGGGGTCCTTCACGTAGGTGTCGAT 2034662 Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33898 | || |||||| ||||| || ||||| || || Sbjct 2034661 GAGGAGTGAATACATCTCCGAGTGGATGTTCTCCAT 2034626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817418927440