Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10 174 2e-38 >seq10 Length=3900288 Score = 174 bits (192), Expect = 2e-38 Identities = 366/538 (68%), Gaps = 16/538 (3%) Strand=Plus/Minus Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 66230 ||||| || |||||||| ||||| | | | || || || || || || ||||| || | | Sbjct 3135483 TGCCAGGGCTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACG 3135424 Query 66231 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 66290 || | || |||||||| | || | | ||| ||||| | ||||| || || |||||| Sbjct 3135423 TAGCGGGCCGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTG 3135364 Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCC 66348 || || | |||||| ||| |||||||||| | | ||||| | || || || | Sbjct 3135363 GTTCCTGCAATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGA--GGCCAATACCAC 3135306 Query 66349 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCTCTATACTA 66407 | || | || ||||| | || || ||| || | || || ||||| ||||| || || Sbjct 3135305 CAGCTGTCTTGGAGATCATGGCACA-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTG 3135247 Query 66408 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 66467 || ||| |||||| | | || ||| || | ||| | | ||||||||||| Sbjct 3135246 TCCTCCTTCATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTG 3135187 Query 66468 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 66527 || | || || || || || || || || || | || | |||||||| ||||| || Sbjct 3135186 AAGAGTGTCGGGGATGCATGAGTGAAGCACTTCTGGGACATGAGATTGTATGTCTCGATG 3135127 Query 66528 GCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 66583 || || ||||| || | |||| || || || |||||||| | ||| ||||| Sbjct 3135126 GCCTTCTCAATATCGTCGCCGTGGATG----CCGACAGCCACACGCATGATCATATGCTG 3135071 Query 66584 AGGTCTTTCAACGATCTTG-TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 66642 |||| ||| ||| |||| ||| || || | || ||| ||||| ||||| || |||| Sbjct 3135070 TGGTCGTTCGGCGA-CTTGCTTGCCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAA 3135012 Query 66643 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 | ||||| || | ||| ||||| || ||||| | || |||||||||||| ||| Sbjct 3135011 AGCCAAAGTATTGGTAGTTGAAGTCCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/291 (67%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||||||||| | || | | || || || |||||||| || || || ||| Sbjct 3136824 GTGAATTGAATGGGTTGTGTGGCAGCCATGGTGCGGAGGTAGTACATGCCGGTCTTGAGA 3136765 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || ||| ||||| || | |||| |||| || | Sbjct 3136764 CCCATCTTCCAGCCAGCAAAGTGCATGGATGTGATTTTGCCCATGGTCGGTTCCTTCAAG 3136705 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| |||| |||||| || ||||||||||| || | |||||| ||||||| | | Sbjct 3136704 TGGATGTTCAGAGATTGGGACTGGTCGATGAAGGCACCTCGGTCTGCCGCCATTTGGAGG 3136645 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 65077 || ||| ||| |||||||| | ||| || || ||| | ||| || || | || | Sbjct 3136644 ATTGTCCGTTGACTGATTTCCCAGACAGTCTTGTACAACGC-CTTGATGTCAGCAGGGAT 3136586 Query 65078 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 ||| | | ||||||| || |||||||| || ||||| | ||||| || Sbjct 3136585 GTTGGGGATGTTCTGAACTGAACCACCATCGGCGATAATACGGTTCTTCAT 3136535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172610775320