Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 176 6e-39 >seq10 Length=3900288 Score = 176 bits (194), Expect = 6e-39 Identities = 388/574 (68%), Gaps = 16/574 (3%) Strand=Plus/Minus Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 |||||| | || | | |||| | | | ||| | ||||| || |||||||| ||||| Sbjct 3135519 TTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCG 3135460 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | | ||||| || || || || ||||| || | ||| | || |||||||| | || Sbjct 3135459 AAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACA 3135400 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | | ||| ||||| | ||||| || | |||||||| || | |||||| ||| | Sbjct 3135399 CGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTT 3135340 Query 72277 GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 |||||||| | || ||||| | || || || || || | || ||||| | || | Sbjct 3135339 GCACGAATGCAGTGAGCATTGA--GGCCAATACCACCAGCTGTCTTGGAGATCATGGCAC 3135282 Query 72335 ATCGTTTTAAC-GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 | ||| || | || || ||||| ||||| || || || ||| |||||| | | || Sbjct 3135281 A-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAG 3135223 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 ||| || | ||| | | ||||||||||| || | || || || || || || Sbjct 3135222 CAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGTCGGGGATGCATGAGTG 3135163 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTG 72509 || || || | |||| |||||||| ||||| || || || ||||| || | | Sbjct 3135162 AAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTCAATATCGTCGCCGTGG 3135103 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG-TTAT 72568 ||| || || || |||||||| | ||||||||| |||| ||| ||| |||| || Sbjct 3135102 ATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTTCGGCGA-CTTGCTTGC 3135048 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 || || | || ||| ||||| ||||| || ||||| ||||| || | ||| |||| Sbjct 3135047 CGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAGTATTGGTAGTTGAAGT 3134988 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 | || ||||| | || |||| ||||||| ||| Sbjct 3134987 CCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139007047480