Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21 154 2e-32 seq10 154 2e-32 >seq21 Length=3175452 Score = 154 bits (170), Expect = 2e-32 Identities = 379/563 (67%), Gaps = 29/563 (5%) Strand=Plus/Plus Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 ||||||| |||||| | |||||||| ||||| || || || |||| ||| | | Sbjct 2034621 TCATGATGGAGAACATCCACTCGGAGATGTATTCACTCCTCATCGACACCTACGTGAAGG 2034680 Query 125311 ATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 | || ||| | || |||| | | || | || |||||||| | || | || || || Sbjct 2034681 ACCC-CAAAGAGAAGACATACCTGTTCGATGCTATCGACACCATCCCCTGCATCCGCAAG 2034739 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | |||||||| ||| | |||| | | || | ||||| Sbjct 2034740 AAGGCCGACTGGGCTCTGAGGTGGATCTCCGACAAGGAGTCCACCTTTGCTCAACGACTG 2034799 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTG 125488 || || ||||| ||||| ||||| |||||||||| ||||| | || || || ||||| || Sbjct 2034800 GTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCCGGGTCG-TTCGCTGCAATCTTCTG 2034858 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||| || || ||||| || || || || || | || ||||| || Sbjct 2034859 GCTCAAGAGCAAGGGCCTGATGCCGGGCCTTACCTTTTCAAATGAACTCATCTCTCGTGA 2034918 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTG 125608 ||||||| | ||| || ||||| || ||| | ||||| |||| | || Sbjct 2034919 CGAGGGCATGCACACCGATTTTGCATGCCTGCTGCT--GCAAC-ATCT------CAAGCA 2034969 Query 125609 CAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACA 125665 || | || |||| |||| ||||| ||| | | ||||| || || || ||| | Sbjct 2034970 CA-AGCC--CGATCCAAAGCTCATCGAGAACGTCATCACCGAGGCAGTCGCTATCGAAAA 2035026 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| |||||||| | || || ||| | || | |||||||||| |||||| ||||| Sbjct 2035027 GGAGTTCTTAACCGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTCCAAGCTTATGTG 2035086 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGCCGCAAG--- 125780 ||||||| |||||||| || || ||| | ||| ||| || ||| |||| Sbjct 2035087 TCAGTACATTGAGTTTGTCGCCGACCGTTTGCTG-----CTTGCCATGGGCAACAAGCGC 2035141 Query 125781 ATTTACAACGCCAAGAATCCCTT 125803 || ||||| || |||||||||| Sbjct 2035142 ATCTACAATGCTCAGAATCCCTT 2035164 Score = 93.3 bits (102), Expect = 6e-14 Identities = 127/175 (73%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | ||||||||| || |||| ||||||||| | ||||| ||||||||||| Sbjct 2034340 TGGAACATGTACAAACGTGCCGAGGCTAGCTTTTGGACAGCAGAAGAAGTCGATCTGTCA 2034399 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGA--AAC--TGAGCGAGAGTTTATATC 125137 ||||| ||| |||||||| | | | |||||| ||| |||||| | || | || Sbjct 2034400 AAGGATCTGCACGATTGGCACAACC----GACTGAACAACGATGAGCGCTACTTCGTCTC 2034455 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTG 125192 ||| || | |||||||| || | || || || ||||||||||| |||||| || Sbjct 2034456 CCACGTTCTTGCCTTCTTCGCTGCTTCAGACGGTATCGTCAACGAGAATCTGCTG 2034510 >seq10 Length=3900288 Score = 154 bits (170), Expect = 2e-32 Identities = 372/556 (67%), Gaps = 8/556 (1%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||| || || | | | | |||||| | || |||||| | ||| |||| | | | || Sbjct 3135361 AACCAATGGAACCTCAAATGGCCTCATTCCCATGCTCCGTGTGTTCAATAACACGGCCCG 3135420 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| |||||||||||||| || || |||||| | ||| |||||||||| || || Sbjct 3135421 CTACGTCGACCAGGGCGGCAATAAGCGACCGGGCGCTTTCGCCATCTACTTGGAGCCCTG 3135480 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || ||||| || | | | | || ||| ||| || || || Sbjct 3135481 GCACGCCGATGTCTTTGAGTTCTTGAACCTAAGAAAGAACCACGGCAAGGAGGAAATCCG 3135540 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC-- 97043 || | |||||||| ||||| | ||| || || ||||||||| |||| ||| | Sbjct 3135541 GGCTCGTGACTTGTTCTATGCGATGTGGACTCCCGACTTGTTCATGGAGCGTGTCGAGAA 3135600 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || || | |||| || | ||||| | | || ||||| ||||| | Sbjct 3135601 GAACCAGG--AATGGACTCTTTTCTGCCCTCATGAAGCTCCAGGTCTTGCCGATGTGTAC 3135658 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATAC-GTGAGACG 97162 ||||| || || ||| ||| | ||||| | |||||||| | || |||| Sbjct 3135659 GGCGACGACTTCAAGGAGCTCTACGAGAGATACGAAAAGGAGGGCCGTGGCCGTCAGAC- 3135717 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 |||| | || | |||| |||||| | |||||| | ||| ||| ||||| || |||| Sbjct 3135718 AGTCAAGGCCC-AGAAGCTGTGGTATGCCATCCTTGAGGCCCAGACTGAGACGGGTACTC 3135776 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | ||||| |||||||||||| || || | || |||||||| ||||||| |||| Sbjct 3135777 CCTACATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACCA 3135836 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | |||||||||| ||||| || ||||| |||||| | | ||||| ||| || | Sbjct 3135837 TTCGAAGCTCCAATCTCTGCACCGAGATTGTCGAGTACACAGCCCCGGATGAGGTTGCTG 3135896 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| |||||| || Sbjct 3135897 TCTGCAATCTGGCTTC 3135912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058986945480