Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 129 1e-24 >seq12 Length=2267901 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || |||| || || |||||||| || || ||||| || || | || || Sbjct 994057 AGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 993998 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| ||||| || || || | ||| ||||||||||| || ||||| || ||| Sbjct 993997 TCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 993938 Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||| ||||| || ||||| || | ||| ||||| | || ||||| || || || || Sbjct 993937 TGGATC-TTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGT 993879 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || ||||| || |||||||| Sbjct 993878 CTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || || ||||| || || || | ||| || Sbjct 994285 AGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 994226 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| ||||| ||||| || || | || ||||| ||||| || ||||| ||||| Sbjct 994225 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCT 994166 Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| ||||| || || || || | ||| || || | || ||||| || || || || Sbjct 994165 TGAATC-TTGCTCTTGACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGT 994107 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || || ||||| Sbjct 994106 CTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 994074 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| | || ||||| ||||| || || || || || || || | ||| Sbjct 994516 CTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCCG 994457 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| || || || ||||| || || | | ||||| || || || || || || ||| Sbjct 994456 TCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTTA 994397 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||||||||| | || || || || | || || || ||| ||||| ||||| || Sbjct 994396 TCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGATC 994337 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| | ||||| ||||| || ||||| Sbjct 994336 GTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 109 bits (120), Expect = 1e-18 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| ||||| || | || || || ||||| || || ||||| Sbjct 994720 TCCTTCTGGATGTTGTAGTCGGATAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAG 994661 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || ||||| || || || || || || || || ||||| ||||| | ||| || || Sbjct 994660 ATCAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTG 994601 Query 104489 TCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || || | || || || || ||||||||||| ||||| || || || || Sbjct 994600 TCGATGGTGTCTG-AGCTCTCAACTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGAC 994542 Query 104548 AAATATCTGCAT 104559 ||| |||||||| Sbjct 994541 AAAAATCTGCAT 994530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398060697284