Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 >seq12 Length=2267901 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTT 94867 ||| ||||| || || | ||| || ||| | || || || |||||| || || ||| Sbjct 994271 AGTGGATTCTTTCTGGATGTTGTAGTCGG--AAAGGGTGCGACCATCCTCGAGTTGCTTT 994214 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | | |||||||||||||||||| ||||| || || | ||| || | Sbjct 994213 CCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTGCTC 994154 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| | ||| |||||| | || || || | |||||||| || ||||| || Sbjct 994153 TTGACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGG 994094 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| ||||| Sbjct 994093 GTCTTCACGAAGATTTGCAT 994074 Score = 102 bits (112), Expect = 7e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| || |||| || || || |||||||||||| || ||||| || | ||| | Sbjct 994764 TTTACTGACCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGT 994705 Query 94833 AATCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||| |||| || | |||||| || || || ||| ||||||| | ||| ||||| Sbjct 994704 AGTCG--GATAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTG 994647 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || || || ||||| || ||||| | || || | |||||| | ||| ||||| | Sbjct 994646 GTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGA 994587 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||| || || || ||||| || || || ||||| |||||||| Sbjct 994586 GCTCTCAACTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291071116280