Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10 178 2e-39 seq21 109 7e-19 >seq10 Length=3900288 Score = 178 bits (196), Expect = 2e-39 Identities = 398/590 (67%), Gaps = 16/590 (3%) Strand=Plus/Minus Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 |||||| || || |||||| | || | | |||| | | | ||| | ||||| || Sbjct 3135535 TTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGG 3135476 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63394 |||||||| ||||| | | | || || || || || || ||||| || | ||| | || Sbjct 3135475 CTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGC 3135416 Query 63395 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63454 |||||||| | || | | ||| ||||| | || ||||| | |||||||| || | Sbjct 3135415 CGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGC 3135356 Query 63455 GATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 |||||| ||| | |||||||| | | ||||| | || || || || || | Sbjct 3135355 AATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGA--GGCCAATACCACCAGCTGTC 3135298 Query 63513 TTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATACCCTCTATGCTATCATCGAT 63571 || ||||| | || || ||| || | ||||| ||||||||||| ||||| || || | Sbjct 3135297 TTGGAGATCATGGCACA-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTT 3135239 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631 ||||| | | || ||| || | ||| | | ||||||||||| || | || Sbjct 3135238 CATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGT 3135179 Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63691 || || || || || || || || | || | |||||||| ||||| || || || Sbjct 3135178 CGGGGATGCATGAGTGAAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTC 3135119 Query 63692 TATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747 ||||| || | |||| || || || |||||||| | ||| ||||| |||| || Sbjct 3135118 AATATCGTCGCCGTGGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTT 3135063 Query 63748 CAACGATCTTG-TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63806 | ||| |||| ||| || || | || ||| ||||| ||||| || ||||| ||||| Sbjct 3135062 CGGCGA-CTTGCTTGCCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAG 3135004 Query 63807 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 || | ||| ||||| || ||||| | || |||||||||||| ||| Sbjct 3135003 TATTGGTAGTTGAAGTCCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/291 (67%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||||||||| | || | | || || || |||||||| || || || ||| Sbjct 3136824 GTGAATTGAATGGGTTGTGTGGCAGCCATGGTGCGGAGGTAGTACATGCCGGTCTTGAGA 3136765 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || ||| ||||| || | |||| |||| || | Sbjct 3136764 CCCATCTTCCAGCCAGCAAAGTGCATGGATGTGATTTTGCCCATGGTCGGTTCCTTCAAG 3136705 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| |||| |||||| || ||||||||||| || | |||||| ||||||| | | Sbjct 3136704 TGGATGTTCAGAGATTGGGACTGGTCGATGAAGGCACCTCGGTCTGCCGCCATTTGGAGG 3136645 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62233 || ||| ||| |||||||| | ||| || || ||| | ||| || || | || | Sbjct 3136644 ATTGTCCGTTGACTGATTTCCCAGACAGTCTTGTACAACGC-CTTGATGTCAGCAGGGAT 3136586 Query 62234 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 ||| | | ||||||| || |||||||| || ||||| | ||||| || Sbjct 3136585 GTTGGGGATGTTCTGAACTGAACCACCATCGGCGATAATACGGTTCTTCAT 3136535 >seq21 Length=3175452 Score = 109 bits (120), Expect = 7e-19 Identities = 226/336 (67%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 33288 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 33347 ||||| | || || ||||| |||||| ||||| |||||||| | | || ||||| Sbjct 2034961 ATGTTGCAGCAGCAGGCATGCAAAATCGGTGTGCATGCCCTCGTCACGAGAGATGAGTTC 2034902 Query 33348 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33407 || ||||| || || || ||||| ||||| | || ||||| || || | |||||| Sbjct 2034901 ATTTGAAAAGGTAAGGCCCGGCATCAGGCCCTTGCTCTTGAGCCAGAAGATTGCAGCGAA 2034842 Query 33408 TGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33467 || || ||||||||||| || || || || || || |||| |||| | || | Sbjct 2034841 CGACCCGGAAAAGAAGATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCAAAGGT 2034782 Query 33468 GG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33524 || | |||| |||||| | ||||||| ||||||||||| | || || || Sbjct 2034781 GGACTCCTTGTCGGAGATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 2034722 Query 33525 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33584 || || || |||| || || || | || || || || || || || || ||||| Sbjct 2034721 GGTGTCGATAGCATCGAACAGGTATGTCTTCTCTTTGGGGTCCTTCACGTAGGTGTCGAT 2034662 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33620 | || |||||| ||||| || ||||| || || Sbjct 2034661 GAGGAGTGAATACATCTCCGAGTGGATGTTCTCCAT 2034626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947020902680