Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10 181 1e-40 >seq10 Length=3900288 Score = 181 bits (200), Expect = 1e-40 Identities = 399/590 (68%), Gaps = 16/590 (3%) Strand=Plus/Minus Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 |||||| || || |||||| | || | | |||| | | | ||| | ||||| || Sbjct 3135535 TTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGG 3135476 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63249 |||||||| ||||| | | | || || || || || || ||||| || | ||| | || Sbjct 3135475 CTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGC 3135416 Query 63250 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGA 63309 |||||||| | || | | ||| ||||| | ||||| || || |||||||| |||| Sbjct 3135415 CGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGC 3135356 Query 63310 GATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 |||||| ||| | |||||||| | | ||||| | || || || || || | Sbjct 3135355 AATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGA--GGCCAATACCACCAGCTGTC 3135298 Query 63368 TTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCTCTATACTATCATCCAT 63426 || ||||| | || || ||| || | || || ||||| ||||| || || || ||| | Sbjct 3135297 TTGGAGATCATGGCACA-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTT 3135239 Query 63427 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63486 ||||| | | || ||| || | ||| | | ||||||||||| || | || Sbjct 3135238 CATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGT 3135179 Query 63487 AGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63546 || || || ||||| || || || | || | |||||||| ||||| || || || Sbjct 3135178 CGGGGATGCATGAGTGAAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTC 3135119 Query 63547 TATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63602 ||||| || | |||| || || || |||||||| | ||| ||||| |||| || Sbjct 3135118 AATATCGTCGCCGTGGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTT 3135063 Query 63603 CAACGATCTTG-TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63661 | ||| |||| ||| || || | || ||| ||||| ||||| || ||||| ||||| Sbjct 3135062 CGGCGA-CTTGCTTGCCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAG 3135004 Query 63662 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63711 || | ||| ||||| || ||||| | || |||||||||||| ||| Sbjct 3135003 TATTGGTAGTTGAAGTCCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631817830800