Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12 125 6e-24 seq21 96.9 3e-15 seq10 91.5 1e-13 >seq12 Length=2267901 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || ||||||| || || || ||| Sbjct 994074 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCAGT 994133 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || |||||||| ||||| || ||||| || ||||| Sbjct 994134 GACACCATCGACAACGTCAAGAGCAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAG 994193 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| || || | |||||| |||||| | ||||| |||||| Sbjct 994194 CAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACCCTTTCCGACTACAAC 994253 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||||||||| Sbjct 994254 ATCCAGAAAGAATCCAC 994270 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| || || || || ||| |||| || || || ||| | | Sbjct 994302 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACGATCACACTCGAGGTTGAATCTTCA 994361 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| || |||||||| || ||||| || ||| Sbjct 994362 GACACAATTGACAACGTCAAGACGAAGATTCAGGATAAGGAGGGCATCCCACCGGACCAA 994421 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||| | || || ||| || |||| ||||||||| Sbjct 994422 CAACGATTGATCTTCGCTGGTAAGCAGCTTGAAGACGGCCGTACACTCTCAGATTACAAC 994481 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||||| | ||| | ||| | ||||||| || ||| Sbjct 994482 ATCCAGAAGGAATCCACTCTGCATCTCGTTCTCAGATTGCGTGGTGGT 994529 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || | || || ||||| || | | | Sbjct 994530 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACTATTACGCTGGAAGTTGAGAGCTCA 994589 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| || || || |||||||||||||| |||||||| || Sbjct 994590 GACACCATCGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 994649 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| || | |||||| ||| ||| | ||||| |||||| Sbjct 994650 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGCCGGACCCTATCCGACTACAAC 994709 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||| | || || || || || |||| || ||| Sbjct 994710 ATCCAGAAGGAGAGCACCTTGCACTTGGTGCTGAGACTGCGAGGTGGT 994757 >seq21 Length=3175452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 229/340 (67%), Gaps = 17/340 (5%) Strand=Plus/Plus Query 117051 TTGGCGCGACGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTT 117110 || || | ||| || | |||||||| ||||| || || |||||||| || || Sbjct 2034785 TTTGCTCAACGACTGGTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCCGGGTCGTTC 2034844 Query 117111 GCTGCCATATTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAA 117170 ||||| || || | |||||| ||| || || |||||||| || || ||| || ||| Sbjct 2034845 GCTGCAATCTTCTGGCTCAAGAGCAAGGGCCTGATGCCGGGCCTTACCTTTTCAAATGAA 2034904 Query 117171 TTAATATCGCGTGACGAAGGTTTACACACCGATTTTGCGTGCATG-TACTACAACAATTA 117229 | || || |||||||| || | |||||||||||||| ||| || | || ||||| Sbjct 2034905 CTCATCTCTCGTGACGAGGGCATGCACACCGATTTTGCATGCCTGCTGCTGCAACA---- 2034960 Query 117230 TATTCCGATCAACGAAAAGTTGTCGCCACAACAAATATTGTCAATGT--TCATAGAGGCG 117287 || |||| | ||| || ||| || | || || ||| ||||| Sbjct 2034961 ---TC---TCAAGCACAAG--CCCGATCCAAAGCTCATCGAGAACGTCATCACCGAGGCA 2035012 Query 117288 GTGGACATTGAAAAGGAATTTTTTACAACAGCTCTACCCTGT-TATTTGCTGGGAATAAA 117346 || | || |||||||| || || || ||| || |||||| ||||||||| || || Sbjct 2035013 GTCGCTATCGAAAAGGAGTTCTTAACCGAAGCGCT-CCCTGTCGGTTTGCTGGGCATGAA 2035071 Query 117347 TGCCACGGAAATGTGTAAATACATTGAATTTGTCGCGGAC 117386 ||| | |||||| | |||||||| |||||||| ||| Sbjct 2035072 CTCCAAGCTTATGTGTCAGTACATTGAGTTTGTCGCCGAC 2035111 >seq10 Length=3900288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 186/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 129580 GGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTAT 129639 ||||||||||||||||| || || ||||| ||||| | ||| | || || || | Sbjct 3136032 GGATAGTAGTTGATGTCGATGATCTTGTTCAAATTGCGGGTCACCACTTGGGTGACCTCG 3135973 Query 129640 TTTAACATTTCAAAATTGTACTCGCCTACATCGATG-TCGACAAA--TTGATTGACACAA 129696 | | | || | |||||||| || | || |||||||| ||| || || Sbjct 3135972 TGGAGGCGGCCGAAGTCATACTCGCC-ACGGCCTTGGTCGACAAAGGTTGGAAGAGCCAG 3135914 Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 | || |||| ||||||||| ||| || | | | ||||||||||||| |||| | Sbjct 3135913 A--GAAGCCAGATTGCAGACAGCAACCTCATCCGGGGCTGTGTACTCGACAATCTCGGTG 3135856 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 || | ||| || |||||| ||||| | ||| || || || ||| ||||||| ||| Sbjct 3135855 CAGAGATTGGAGCTTCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCA 3135796 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||||| | |||||| || || ||||| || Sbjct 3135795 TCCTTGTAGAGCATGTAGGGAGTACCCGTCTC 3135764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727882344995