Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq12 154 3e-32 seq9 125 1e-23 >seq12 Length=2267901 Score = 154 bits (170), Expect = 3e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || || || | || |||||||| | ||| ||| || |||||||| | Sbjct 994764 TTTACTGACCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGT 994705 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||||| || |||| ||||| || | ||||| ||||| || || ||||| || |||| Sbjct 994704 AGTCGGATAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGT 994645 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 ||||||| || || |||||||| || ||||| | |||||| ||||||||||||| Sbjct 994644 CGGGTGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGC 994585 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||| || || || || || || ||||||||||| || |||||||| Sbjct 994584 TCTCAACTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| |||||| || |||||||| |||||||| || ||| Sbjct 994072 CCGCCACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTC 994013 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| ||||| | || || || || ||| Sbjct 994012 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 993953 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| || ||||| |||||| ||||||||||| ||| || || || Sbjct 993952 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTC-GCTGGACTCGAC 993894 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||| ||||| |||||||| Sbjct 993893 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| ||||| |||||||| || ||||| || || | ||||| || | ||| Sbjct 994276 TGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGTTGC 994217 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || ||||| || ||||| | ||| || || || |||||||||||||| ||||||||||| Sbjct 994216 TTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTG 994157 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||||| ||||||||||| || || || || | |||||||| || || || Sbjct 994156 CTCTTGACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTC 994097 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || ||||| Sbjct 994096 AGGGTCTTCACGAAGATTTGCAT 994074 >seq9 Length=4529175 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || ||||| || || ||| || |||| ||||| || | ||||| || ||||| || Sbjct 3501053 TTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGATC 3500994 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || ||||| ||||| |||||||||||||| || ||||| | ||||| ||| Sbjct 3500993 AACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGTCG 3500934 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | ||||| || || | ||||||||| || |||||||||||||||||||| Sbjct 3500933 ATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 3500875 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| || || || || || |||||||| || ||||| Sbjct 1601667 CCGCCGCGGAGACGCAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAA 1601726 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || || | || |||||||| || Sbjct 1601727 AGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 1601786 Query 68355 ATGCCTTCCTTGTCTTGAA 68373 || |||||||||||| ||| Sbjct 1601787 ATCCCTTCCTTGTCTGGAA 1601805 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| |||||||| ||||||||| ||||||||| ||||||||||| || || || || Sbjct 2801939 GAGCCAGGCCACGTTCTTGACGTCCAAGTGGTTTGTGGGTTCGTCCAGGAGGAGAATATC 2801880 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || | | | ||| || | || | || |||||| |||||||| ||||| ||||| Sbjct 2801879 AGGGTTCTCAAACACGGCACGAGCAAGGGCCAACTTCATCTTCCAGCCACCGGAGAGGGA 2801820 Query 225634 G 225634 | Sbjct 2801819 G 2801819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622135033560