Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-21 seq9 111 2e-19 >seq12 Length=2267901 Score = 118 bits (130), Expect = 1e-21 Identities = 172/239 (72%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| |||| |||| | | || |||||| ||||| ||||||||||| || || |||| Sbjct 994764 TTTACTGACCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGT 994705 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 | || | || ||||| | || || || ||||| || || || || |||| |||||||| Sbjct 994704 AGTCGGATAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGT 994645 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---G 42149 ||| ||| | | |||||||||| ||| || ||||| ||| | | | ||||| | Sbjct 994644 CGGGTGGGATACCCTCCTTGTCCTGGATCTTGGATTTGA-CGTTGTCGATGGTGTCTGAG 994586 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || | ||| || || ||||| || || ||||| ||||| || ||||| Sbjct 994585 CTC---TCAACTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Score = 109 bits (120), Expect = 6e-19 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| ||||| || || |||||||| | || || || |||| || ||||| Sbjct 994505 ATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCCGTCTTCAAGCTG 994446 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 |||||||||||| || | ||| || ||||| | ||| | || |||||| ||| ||| | | Sbjct 994445 CTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTTATCC-TGAATCT 994387 Query 42125 TTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182 | || |||| ||| | | | ||||| ||||| || |||| ||||| || ||||| Sbjct 994386 TCGTCTTGA-CGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGATCGTCTTGCCA 994328 Query 42183 GTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || |||||||||||||| Sbjct 994327 GTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || ||| || || | || || ||||| ||||||||||| Sbjct 994037 CTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAA 993978 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| || | || | || ||||||||| ||| || |||| | Sbjct 993977 GATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATT 993918 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||||| || || || || | |||||||| ||||| || || |||||||| Sbjct 993917 GTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTAC 993858 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 993857 GAAAATCTGCAT 993846 >seq9 Length=4529175 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42010 ATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTAC 42069 |||||| | |||| || |||||||| || ||| ||||| | || || || ||||| | Sbjct 3501064 ATGTGCGCACCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGC 3501005 Query 42070 CAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTT 42129 | ||||| || | ||||||||||| | ||| | || ||||||||| ||| || || Sbjct 3501004 CCGCGAAGATCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATT 3500945 Query 42130 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 42189 ||| | | | ||||||| ||||| || |||| |||||||| |||||||| || | Sbjct 3500944 TGACATTGTCGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGG 3500885 Query 42190 TCTTTACAAAG 42200 |||| || ||| Sbjct 3500884 TCTTGACGAAG 3500874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212643826320